1. Target specificities of estrogen receptor-related receptors: analysis of binding sequences and identification of Rb1-inducible coiled-coil 1 (Rb1cc1) as a target gene
- Author
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Takashi Osumi, Fumiko Hirose, Mst. Hasina Akter, Hidetoshi Okabe, Tokuhiro Chano, and Tomohiro Yamaguchi
- Subjects
Transcriptional Activation ,Response element ,Molecular Sequence Data ,Autophagy-Related Proteins ,Biology ,Response Elements ,Biochemistry ,Cell Line ,Substrate Specificity ,Transactivation ,Mice ,Recognition sequence ,Coactivator ,Animals ,Humans ,Promoter Regions, Genetic ,Molecular Biology ,Estrogen receptor beta ,Binding Sites ,Base Sequence ,Intracellular Signaling Peptides and Proteins ,Promoter ,General Medicine ,Sequence Analysis, DNA ,Molecular biology ,Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha ,Nuclear receptor ,Receptors, Estrogen ,Trans-Activators ,Chromatin immunoprecipitation ,Protein Binding ,Transcription Factors - Abstract
Estrogen receptor-related receptors (ERRs) are orphan members of the nuclear receptor superfamily. A single AGGTCA sequence element preceded by three conserved nucleotides has been identified as a specific recognition motif of ERRs. Here we performed systematic analyses of target sequences on all three ERR subtypes, alpha, beta and gamma. In electrophoretic gel-mobility shift assay and transcriptional reporter assays, they exhibited similar patterns of recognition specificities, showing extremely broad ranges of target sequences. We searched a mouse promoter database for a gene carrying possible ERR-binding sequences. The Rb-1 inducible coiled-coil 1 (Rb1cc1) gene was found to contain two putative ERR binding elements, named response element (RE)-1 and RE-2, in the promoter region. In gene reporter assays, RE-2, but not RE-1, functioned as an effective cis-regulatory element for transactivation by ERRalpha in the presence of a coactivator, peroxisome proliferator-activated receptor gamma coactivator-1alpha. Mutational analyses suggested that RE-2 is recognized by ERRalpha partly as a monovalent element, but also as a direct repeat motif separated by four spacer nucleotides. In vivo binding of ERRalpha to the Rb1cc1 promoter region was confirmed by the chromatin immunoprecipitation assay. Thus, Rb1cc1 is a target gene of ERRalpha, driven by a novel type of recognition sequence.
- Published
- 2007