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Advances in high-throughput geno- typing technologies have afforded researchers the op- portunity to study ever-increasing numbers of SNP in animal genomes. However, many studies encounter difficulties in obtaining sufficient quantities of high- quality DNA for such analyses, particularly when the source biological material is limited or degraded. The recent development of in vitro whole-genome amplifica- tion approaches has permitted researchers to circum- vent these challenges by increasing the amount of us- able DNA in normally small-quantity samples. Here, we assess the performance of whole-genome amplification products generated from ovine genomic DNA using a high-throughput SNP genotyping platform, the newly developed Illumina ovineSNP50 BeadChip. Our results demonstrate a high genotype call rate for conventional genomic DNA and whole-genome amplified genomic DNA. The data also reveal an exceptionally high con- cordance rate (≥99%) between the genotypes generated from whole-genome amplified products and their con- ventional genomic DNA counterparts. This study sup- ports the use of whole-genome amplification as a viable solution for the analysis of high-density SNP genotypic data using compromised or limited starting material.

Two experiments were conducted to assess effects of endophyte treatments (Exp. 1), forage species (Exp. 2), and supplementation (Exp. 2) on urea production, excretion, and recycling in beef steers. Infusion of 15,15 N-urea and enrichment of urea in urine samples were used to calculate urea-N entry and recycling to the gut. Acceptably stable enrichment of 15 N-urea in urine was obtained after 50 h of intrajugular infusion of 15,15 N-urea, indicating that valid data on urea metabolism can be obtained from steers fed forages twice daily. After adjustment by covariance for differences in N intake among treatments in Exp. 1, steers fed endophyte-infected tall fescue had less (P < 0.10) urea-N entry, recycling to the gut, and return of recycled urea-N to the ornithine cycle than those fed endophyte-free or novel endophyte-infected tall fescue. However, urea-N urinary excretion or return to the gut was similar among endophyte treatments when expressed as a proportion of urea-N entry. Urea-N entry and return to the gut in Exp. 2 was similar in steers fed gamagrass or orchardgrass hay after adjustment by covariance for differences in N intake. Less (P < 0.01) urinary excretion, expressed as grams per day or as a proportion of urea-N entry, with gamagrass than with orchardgrass was associated with faster in vitro NDF-N digestion with gamagrass. Supplementation of gamagrass or orchardgrass with 1.76 kg/d of readily fermentable fiber and starch decreased urea entry (P < 0.06) and urinary excretion of urea (P < 0.01). Interactions between hay source and supplement reflected a greater response to supplementation for steers fed orchardgrass than for those fed gamagrass. After adjustment for differences among treatments in N supply, results of both experiments support the concept of improved N use in response to increased carbohydrate fermentability in the rumen, due either to inherent differences in forage fiber or to supplementation with readily fermentable carbohydrate (starch or fiber). Closer coordination of ruminal fermentation of carbohydrate and N sources provided greater and more efficient capture of dietary N as tissue protein in forage-fed steers.

This study evaluated the effect of residual feed intake (RFI) on the expression of constituent genes of the somatotropic axis in skeletal muscle across 2 di- verse dietary regimes. Beef heifers (n = 86; initial BW = 191.8 kg; SD = 37) fed a low-forage (LF) total mixed ra- tion comprising 70:30 concentrate:corn silage (11.0 MJ ME/kg DM) were ranked on RFI. The 10 greatest- (high- RFI) and 10 lowest- (low-RFI) ranking animals were se- lected for the current study. Biopsies of the LM were harvested at the end of LF dietary period and again after a 6-wk period during which heifers were offered a high- forage grass-silage-only diet (9.7 MJ ME/kg DM). Real- time PCR was used to quantify mRNA transcripts of 11 genes including IGF-1, IGF-2, their receptors (IGF-1R and IGF-2R), 6 IGFBP, and GH receptor (GHR). There was no evidence of a RFI phenotype × diet interaction (P > 0.10) for any of the genes examined. An effect (P = 0.02) of RFI phenotype was evident for the abundance of GHR mRNA, with twofold greater expression de- tected in the low-RFI compared with the high-RFI phe- notype. Additionally, mRNA expression of IGF-1R was upregulated (1.7-fold; P = 0.04) for the low-RFI com- pared with high-RFI heifers. Residual feed intake was negatively associated with IGF-1R (r = -0.41; P < 0.05) and GHR (r = -0.50; P < 0.05) mRNA. Moderate nega- tive correlation coeffi cients were also observed between feed conversion ratio (F:G) and gene expression levels for IGF-1R (r = -0.61; P < 0.01) as well as for GHR (r = -0.49; P < 0.05). Moreover, associations were detected between DMI with IGF-1R (r = -0.42; P = 0.07) and IGF-2R (r = 0.40; P = 0.07). The IGF-1R mRNA was positively correlated with IGF-1 (r = 0.34; P < 0.05) and IGF-2 (r = 0.71; P < 0.001) mRNA. Associations be- tween IGF-1R and IGF-2R with IGFBP5 and GHR were positive (ranging from, r = 0.32 to 0.49). These data sug- gest that components of the somatotropic axis expressed within muscle tissue may be involved in the regulation of feed effi ciency in beef cattle. This effect is apparently consistent across contrasting dietary regimens.

Advances in high-throughput genotyping technologies have afforded researchers the opportunity to study ever-increasing numbers of SNP in animal genomes. However, many studies encounter difficulties in obtaining sufficient quantities of high-quality DNA for such analyses, particularly when the source biological material is limited or degraded. The recent development of in vitro whole-genome amplification approaches has permitted researchers to circumvent these challenges by increasing the amount of usable DNA in normally small-quantity samples. Here, we assess the performance of whole-genome amplification products generated from ovine genomic DNA using a high-throughput SNP genotyping platform, the newly developed Illumina ovineSNP50 BeadChip. Our results demonstrate a high genotype call rate for conventional genomic DNA and whole-genome amplified genomic DNA. The data also reveal an exceptionally high concordance rate (or = 99%) between the genotypes generated from whole-genome amplified products and their conventional genomic DNA counterparts. This study supports the use of whole-genome amplification as a viable solution for the analysis of high-density SNP genotypic data using compromised or limited starting material.

Food and Drug Administration regulations currently permit addition of .3 mg of Se per kilogram of diet for chickens, turkeys, ducks, swine, sheep, and cattle. However, field reports indicate that this level may not be adequate for ruminants in all situations. Because sodium selenite is the most common supplemental form and is known to be readily absorbed to particles or reduced to insoluble elemental Se or selenides in acid, anaerobic environments, studies were conducted with dairy cattle, sheep, and horses fed sodium selenate to determine whether Se from this source was more bioavailable than Se from sodium selenite. A 2-wk period of no Se supplementation was followed by 49 or 56 d of Se supplementation at .3 mg/kg of dietary DM. Serum Se concentrations and glutathione peroxidase (GSHPx) activities measured initially and periodically thereafter revealed no difference between Se forms in sheep and horses and only a small (P less than .05) advantage for selenate in supporting serum Se concentration in dairy cattle. Selenium concentrations in skeletal muscle and liver of sheep were not different between Se forms. Serum Se, but not GSHPx, increased with time, and .3 mg of supplemental Se per kilogram of dietary DM from either sodium selenate or sodium selenite supported normal serum Se concentrations in sheep, dairy cattle, and horses.

Two experiments were conducted to assess effects of endophyte treatments (Exp. 1), forage species (Exp. 2), and supplementation (Exp. 2) on urea production, excretion, and recycling in beef steers. Infusion of (15,15)N-urea and enrichment of urea in urine samples were used to calculate urea-N entry and recycling to the gut. Acceptably stable enrichment of (15)N-urea in urine was obtained after 50 h of intrajugular infusion of (15,15)N-urea, indicating that valid data on urea metabolism can be obtained from steers fed forages twice daily. After adjustment by covariance for differences in N intake among treatments in Exp. 1, steers fed endophyte-infected tall fescue had less (P0.10) urea-N entry, recycling to the gut, and return of recycled urea-N to the ornithine cycle than those fed endophyte-free or novel endophyte-infected tall fescue. However, urea-N urinary excretion or return to the gut was similar among endophyte treatments when expressed as a proportion of urea-N entry. Urea-N entry and return to the gut in Exp. 2 was similar in steers fed gamagrass or orchardgrass hay after adjustment by covariance for differences in N intake. Less (P0.01) urinary excretion, expressed as grams per day or as a proportion of urea-N entry, with gamagrass than with orchardgrass was associated with faster in vitro NDF-N digestion with gamagrass. Supplementation of gamagrass or orchardgrass with 1.76 kg/d of readily fermentable fiber and starch decreased urea entry (P0.06) and urinary excretion of urea (P0.01). Interactions between hay source and supplement reflected a greater response to supplementation for steers fed orchardgrass than for those fed gamagrass. After adjustment for differences among treatments in N supply, results of both experiments support the concept of improved N use in response to increased carbohydrate fermentability in the rumen, due either to inherent differences in forage fiber or to supplementation with readily fermentable carbohydrate (starch or fiber). Closer coordination of ruminal fermentation of carbohydrate and N sources provided greater and more efficient capture of dietary N as tissue protein in forage-fed steers.

A 2 x 3 factorial experiment conducted in three replicates of a randomized complete block design compared the effects of calcium selenite and sodium selenite at three different levels of Se (.3, 5, or 15 ppm) in the diets of growing swine on performance and tissue Se concentrations. Ninety pigs averaging 12.5 kg of BW were given ad libitum access to corn-soybean meal diets fortified with one of the treatment Se sources and dietary levels for a 35-d experimental period. Growth and feed intake were similar in pigs fed .3 and 5 ppm of Se but were lower (P less than .01) in those fed 15 ppm from either Se source. Serum Se increased (P less than .01) as dietary Se level increased with no difference between Se sources at each dietary Se level. Liver, kidney, and longissimus muscle Se concentrations increased (P less than .01) as the dietary level of Se increased and were similar when either Se sources was provided. These results indicate that calcium selenite was as effective as sodium selenite using the measurement criteria of growth, serum, and tissue Se concentrations and glutathione peroxidase activities of growing swine when fed at approved, marginally toxic, and toxic dietary Se levels.

Effects of environmental factors such as ewe age, season of exposure, and time from lambing to exposure on fertility were evaluated using records on 1,084 Dorset ewes in the STAR accelerated lambing system. The STAR program consisted of five 30-d concurrent breeding and lambing periods per year beginning on January 1, March 15, May 27, August 8, and October 20. Fertility in the flock changed in a cyclic and predictable fashion during the year. Changes in prolificacy were less consistent but also tended to show cyclic variation. Matings that occurred within the typical breeding season (August, October, and January) were more fertile than those occurring in March and June. However, fertility also varied with the age of the ewe and the time since the ewe's last lambing. Except in June, fertility at the first postpartum mating increased as ewes aged. In March and June matings, adult ewes that had just weaned lambs were less fertile than ewes that had failed to conceive in the previous season and therefore had longer postpartum intervals. However, in October and January, ewes that had just weaned lambs were more fertile. A matrix of expected pregnancy rates, or probabilities of fertility, was constructed using a mixed GLM to describe the combined effect of season, ewe age, and time since lambing on ewe fertility in accelerated lambing.

Data consisting of 948 calf records collected from 1978 to 1982 were analyzed to determine the effects of breeding methods used to improve commercial herds genetically on birth and weaning traits. Four distinct groups were used in the project: Group 1 (G1), an unselected, random mating Hereford control line; Group 2 (G2), a Hereford group using sires selected for yearling growth; Group 3 (G3), a rotational cross with Angus, Hereford, Charolais and Simmental breeds; and Group 4 (G4), a rotational cross with Angus, Hereford, Simmental and Holstein-Friesian breeds. Traits analyzed were birth weight (BW), calving difficulty (CD), percent assisted births (%AB), percent born alive (%BL), preweaning average daily gain (PWDG), relative growth rate (RGR), weaning weight (WWT) and percent weaned (%WND). The use of high yearling weight sires in G2 increased calf size (P less than .01) at birth and weaning by 8.9 and 28.1 kg, respectively, along with increased CD (P less than .01). Use of rotational crossbreeding systems increased calf size and growth from birth to weaning (P less than .01), but decreased CD and %AB (P less than .01) by .17 units and 13.5%, respectively. Including Holstein-Friesian in G4 resulted in further increases in preweaning growth (P less than .01) and calving ease was improved without affecting BWT compared with G3.

The effects of crossbreeding, cattle type and dietary energy level on semitendinosus muscle (ST) development, feedlot performance, daily carcass protein and fat gain and serum anabolic hormone concentrations were studied. Over 3 consecutive years, 176 feedlot steers representing four cattle types - unselected Hereford (UH), selected Hereford (SH), Angus x Hereford x Charolais (AHC) and Angus x Hereford x Holstein (AHH) - were fed either an all-corn silage (HS) or a high grain (HG) diet. Steers were slaughtered on day 1 and at the end of the feedlot trial, and ST muscles were removed rapidly. During years 2 and 3, single blood samples were obtained from steers on days 1, 29, 57, 113 and 169, and analyzed for insulin and growth hormone (GH). Steers fed HG had a higher (P less than .005) average daily gain (ADG) than steers fed HS, and cattle type had an effect (P less than .005) on ADG. Cattle type and HG affected (P less than .005) daily carcass protein and fat gain. Weight of ST muscle and total muscle RNA, DNA and protein content increased with frame size, and HS steers had heavier (P less than .05) ST muscles than the HG steers. Steers fed HG had higher (P less than .01) serum insulin concentrations than steers fed HS, but there were no consistent cattle type effects. Serum GH concentrations were not affected by cattle type or diet. Serum insulin concentrations, combined across diet and cattle types, were correlated (P less than .01) with ADG; however, serum GH, assessed on the same basis, was not related to ADG. Average daily protein and fat gain were positively related to serum insulin and were negatively related to serum GH.