1. Croceibacterium gen. nov., with description of Croceibacterium ferulae sp. nov., an endophytic bacterium isolated from Ferula sinkiangensis K. M. Shen and reclassification of Porphyrobacter mercurialis as Croceibacterium mercuriale comb. nov
- Author
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Yonghong Liu, Zhou-Yan Dong, Osama Abdalla Mohamad, Wen-Jun Li, Min Xiao, Dilfuza Egamberdieva, Yongguang Zhang, Bao-Zhu Fang, and Li Li
- Subjects
DNA, Bacterial ,0106 biological sciences ,0301 basic medicine ,China ,Ubiquinone ,Plant Roots ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,03 medical and health sciences ,Genus ,RNA, Ribosomal, 16S ,Porphyrobacter colymbi ,Botany ,Phospholipids ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Alphaproteobacteria ,chemistry.chemical_classification ,Base Composition ,Plants, Medicinal ,Phylogenetic tree ,biology ,Strain (chemistry) ,Endangered Species ,Fatty Acids ,Fatty acid ,Sequence Analysis, DNA ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,Bacterial Typing Techniques ,Ferula ,030104 developmental biology ,chemistry ,Porphyrobacter ,Bacteria - Abstract
A novel endophytic bacterium, designated strain SX2RGS8T, was isolated from the surface-sterilized roots of an endangered medicinal plant (Ferula sinkiangensis K. M. Shen) collected from Xinjiang, north-western PR China. The taxonomic position of the candidate was investigated using a polyphasic approach. Strain SX2RGS8T was found to be aerobic, Gram-stain-negative, oxidase-negative, catalase-positive and axiolitic-shaped. Strain SX2RGS8T grew at 4–45 °C (optimum, 28 °C), pH 4.0–10.0 (pH 7.0) and in the presence of 0–5 % (w/v) NaCl. The polar lipids detected for strain SX2RGS8T were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, phosphatidylinositol, unidentified phosphoglycolipids, an unidentified phospholipid and unidentified lipids. The major respiratory quinone of strain SX2RGS8T was ubiquinone 10 and the major fatty acid was summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). The DNA G+C content was determined to be 66.5 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that the isolate belonged to the family Erythrobacteraceae and showed 99.2 % ( Porphyrobacter mercurialis ), 95.5 % ( Porphyrobacter donghaensisi) and 95.4 % ( Porphyrobacter colymbi ) similarities to its closest relatives. The isolate contained carotenoids, but no bacteriochlorophyll a. On the basis of phenotypic, genotypic and phylogenetic data, strain SX2RGS8T represents a novel species of a novel genus in the family Erythrobacteraceae , for which the name Croceibacterium ferulae gen. nov., sp. nov. is proposed. The type strain is SX2RGS8T (=CGMCC 1.16402T=KCTC 62090T). In addition, Porphyrobacter mercurialis Coil et al. 2016 is proposed to be transferred to this new genus as Croceibacterium mercuriale comb. nov.
- Published
- 2019