1. Vogesella urethralis sp. nov., isolated from human urine, and emended descriptions of Vogesella perlucida and Vogesella mureinivorans .
- Author
-
Lan K, Cai YM, Li LH, Zeng JM, Yu XG, Qu PH, Li HL, Liu YY, Chen L, Chen C, and Huang B
- Subjects
- Bacteria, Aerobic genetics, Bacterial Typing Techniques, Base Composition, Betaproteobacteria isolation & purification, China, DNA, Bacterial genetics, Fatty Acids chemistry, Humans, Hydroxybutyrates metabolism, Nucleic Acid Hybridization, Phospholipids chemistry, Polyesters metabolism, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Ubiquinone chemistry, Betaproteobacteria classification, Phylogeny, Urine microbiology
- Abstract
A novel Vogesella strain, YM-1
T , was recovered from human urine in PR China in 2017. Cells of strain YM-1T were Gram-stain-negative, rod-shaped, aerobic, motile, non-spore-forming and poly-β-hydroxybutyrate-accumulating. The strain contained C16:1 ω6 c /C16:1 ω7 c , C16:0 and C18:0 ω7 c as major fatty acids; phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an unidentified phospholipid as major polar lipids; and ubiquinone-8 as the predominant respiratory quinone. Comparison of 16S rRNA gene sequences indicated that this strain had highest similarities to Vogesella perlucida DS-28T (98.8 %) and Vogesella mureinivorans 389T (98.1 %). The results of phylogenetic analysis based on the 16S rRNA gene sequences revealed that the novel strain was clustered and well separated with V. perlucida DS-28T and V. mureinivorans 389T within the genus Vogesella . The average nucleotide identity (ANI) and amino acid identity (AAI) analyses showed that this strain was not identified as V. perlucida DS-28T or V. mureinivorans 389T , with values well below the threshold limit for species demarcation (ANI <88.1 %, AAI <88.6 %). Based on the above results, strain YM-1T is proposed to be a novel species of the genus Vogesella with the name Vogesella urethralis sp. nov. (YM-1T =NBRC 113779=CGMCC 1.17135).- Published
- 2020
- Full Text
- View/download PDF