9 results on '"Liming, Yang"'
Search Results
2. ICE-CBF-COR Signaling Cascade and Its Regulation in Plants Responding to Cold Stress
- Author
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Delight Hwarari, Yuanlin Guan, Baseer Ahmad, Ali Movahedi, Tian Min, Zhaodong Hao, Ye Lu, Jinhui Chen, and Liming Yang
- Subjects
Transcriptional Activation ,QH301-705.5 ,C-repeat Binding Factor ,plant ,Catalysis ,Inorganic Chemistry ,Gene Expression Regulation, Plant ,transcription factors ,Inducer of CBF Expression ,Biology (General) ,Physical and Theoretical Chemistry ,QD1-999 ,Molecular Biology ,Spectroscopy ,Plant Physiological Phenomena ,Plant Proteins ,Cold-Shock Response ,Organic Chemistry ,food and beverages ,General Medicine ,cold response genes ,Computer Science Applications ,Chemistry ,cold stress ,Trans-Activators ,Protein Processing, Post-Translational ,Signal Transduction - Abstract
Cold stress limits plant geographical distribution and influences plant growth, development, and yields. Plants as sessile organisms have evolved complex biochemical and physiological mechanisms to adapt to cold stress. These mechanisms are regulated by a series of transcription factors and proteins for efficient cold stress acclimation. It has been established that the ICE-CBF-COR signaling pathway in plants regulates how plants acclimatize to cold stress. Cold stress is perceived by receptor proteins, triggering signal transduction, and Inducer of CBF Expression (ICE) genes are activated and regulated, consequently upregulating the transcription and expression of the C-repeat Binding Factor (CBF) genes. The CBF protein binds to the C-repeat/Dehydration Responsive Element (CRT/DRE), a homeopathic element of the Cold Regulated genes (COR gene) promoter, activating their transcription. Transcriptional regulations and post-translational modifications regulate and modify these entities at different response levels by altering their expression or activities in the signaling cascade. These activities then lead to efficient cold stress tolerance. This paper contains a concise summary of the ICE-CBF-COR pathway elucidating on the cross interconnections with other repressors, inhibitors, and activators to induce cold stress acclimation in plants.
- Published
- 2021
3. CRISPR-Based Genome Editing and Its Applications in Woody Plants
- Author
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Tian Min, Delight Hwarari, Dong’ao Li, Ali Movahedi, and Liming Yang
- Subjects
Gene Editing ,Inorganic Chemistry ,Organic Chemistry ,General Medicine ,CRISPR-Cas Systems ,Physical and Theoretical Chemistry ,Wood ,Molecular Biology ,Genome, Plant ,Spectroscopy ,Catalysis ,Trees ,Computer Science Applications - Abstract
CRISPR/Cas-based genome editing technology provides straightforward, proficient, and multifunctional ways for the site-directed modification of organism genomes and genes. The application of CRISPR-based technology in plants has a vast potential value in gene function research, germplasm innovation, and genetic improvement. The complexity of woody plants genome may pose significant challenges in the application and expansion of various new editing techniques, such as Cas9, 12, 13, and 14 effectors, base editing, particularly for timberland species with a long life span, huge genome, and ploidy. Therefore, many novel optimisms have been drawn to molecular breeding research based on woody plants. This review summarizes the recent development of CRISPR/Cas applications for essential traits, including wood properties, flowering, biological stress, abiotic stress, growth, and development in woody plants. We outlined the current problems and future development trends of this technology in germplasm and the improvement of products in woody plants.
- Published
- 2022
- Full Text
- View/download PDF
4. Stress Sensitivity Is Associated with Differential Accumulation of Reactive Oxygen and Nitrogen Species in Maize Genotypes with Contrasting Levels of Drought Tolerance
- Author
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Xinzhi Ni, Robert D. Lee, Robert C. Kemerait, Brian T. Scully, Jake C. Fountain, Baozhu Guo, Pingsheng Ji, Hui Wang, and Liming Yang
- Subjects
Antioxidant ,medicine.medical_treatment ,maize seedlings ,Drought tolerance ,Biology ,Photosynthesis ,Zea mays ,Article ,Catalysis ,Inorganic Chemistry ,lcsh:Chemistry ,chemistry.chemical_compound ,medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,lcsh:QH301-705.5 ,Spectroscopy ,Reactive nitrogen species ,chemistry.chemical_classification ,reactive oxygen species ,Reactive oxygen species ,Chlorosis ,Organic Chemistry ,fungi ,drought stress ,Wilting ,food and beverages ,General Medicine ,Droughts ,Computer Science Applications ,reactive nitrogen species ,chemistry ,Agronomy ,lcsh:Biology (General) ,lcsh:QD1-999 ,Seedlings ,Adaptation - Abstract
Drought stress decreases crop growth, yield, and can further exacerbate pre-harvest aflatoxin contamination. Tolerance and adaptation to drought stress is an important trait of agricultural crops like maize. However, maize genotypes with contrasting drought tolerances have been shown to possess both common and genotype-specific adaptations to cope with drought stress. In this research, the physiological and metabolic response patterns in the leaves of maize seedlings subjected to drought stress were investigated using six maize genotypes including: A638, B73, Grace-E5, Lo964, Lo1016, and Va35. During drought treatments, drought-sensitive maize seedlings displayed more severe symptoms such as chlorosis and wilting, exhibited significant decreases in photosynthetic parameters, and accumulated significantly more reactive oxygen species (ROS) and reactive nitrogen species (RNS) than tolerant genotypes. Sensitive genotypes also showed rapid increases in enzyme activities involved in ROS and RNS metabolism. However, the measured antioxidant enzyme activities were higher in the tolerant genotypes than in the sensitive genotypes in which increased rapidly following drought stress. The results suggest that drought stress causes differential responses to oxidative and nitrosative stress in maize genotypes with tolerant genotypes with slower reaction and less ROS and RNS production than sensitive ones. These differential patterns may be utilized as potential biological markers for use in marker assisted breeding.
- Published
- 2015
- Full Text
- View/download PDF
5. Comparative Transcriptional Analysis of Loquat Fruit Identifies Major Signal Networks Involved in Fruit Development and Ripening Process
- Author
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Weicheng Hu, Song Huwei, Ting Shen, Xiang-xiang Zhao, Xinfeng Wang, and Liming Yang
- Subjects
0106 biological sciences ,0301 basic medicine ,01 natural sciences ,Genome ,lcsh:Chemistry ,Transcriptome ,transcriptome analysis ,Gene Expression Regulation, Plant ,lcsh:QH301-705.5 ,Spectroscopy ,Plant Proteins ,Molecular breeding ,Gene Expression Regulation, Developmental ,High-Throughput Nucleotide Sequencing ,food and beverages ,Ripening ,General Medicine ,Computer Science Applications ,expression profile ,Eriobotrya japonica ,Metabolic Networks and Pathways ,Computational biology ,Eriobotrya ,Biology ,Article ,Catalysis ,Inorganic Chemistry ,03 medical and health sciences ,Botany ,Physical and Theoretical Chemistry ,KEGG ,ripening-regulated genes ,Molecular Biology ,Transcription factor ,Gene ,Indoleacetic Acids ,Gene Expression Profiling ,Organic Chemistry ,Molecular Sequence Annotation ,Ethylenes ,biology.organism_classification ,Carotenoids ,Gene Ontology ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,Fruit ,fruit development ,010606 plant biology & botany - Abstract
Loquat (Eriobotrya japonica Lindl.) is an important non-climacteric fruit and rich in essential nutrients such as minerals and carotenoids. During fruit development and ripening, thousands of the differentially expressed genes (DEGs) from various metabolic pathways cause a series of physiological and biochemical changes. To better understand the underlying mechanism of fruit development, the Solexa/Illumina RNA-seq high-throughput sequencing was used to evaluate the global changes of gene transcription levels. More than 51,610,234 high quality reads from ten runs of fruit development were sequenced and assembled into 48,838 unigenes. Among 3256 DEGs, 2304 unigenes could be annotated to the Gene Ontology database. These DEGs were distributed into 119 pathways described in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. A large number of DEGs were involved in carbohydrate metabolism, hormone signaling, and cell-wall degradation. The real-time reverse transcription (qRT)-PCR analyses revealed that several genes related to cell expansion, auxin signaling and ethylene response were differentially expressed during fruit development. Other members of transcription factor families were also identified. There were 952 DEGs considered as novel genes with no annotation in any databases. These unigenes will serve as an invaluable genetic resource for loquat molecular breeding and postharvest storage.
- Published
- 2016
- Full Text
- View/download PDF
6. Thioredoxin 2 Offers Protection against Mitochondrial Oxidative Stress in H9c2 Cells and against Myocardial Hypertrophy Induced by Hyperglycemia.
- Author
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Hong Li, Changqing Xu, Quanfeng Li, Xiuxiang Gao, Liming Yang, Sa Shi, Erkio Sugano, and Hiroshi Tomita
- Subjects
THIOREDOXIN ,OXIDATIVE stress ,DIABETIC cardiomyopathy ,CARDIAC hypertrophy ,HYPERGLYCEMIA ,PEROXIREDOXINS ,THERAPEUTICS - Abstract
Mitochondrial oxidative stress is thought to be a key contributor towards the development of diabetic cardiomyopathy. Thioredoxin 2 (Trx2) is a mitochondrial antioxidant that, along with Trx reductase 2 (TrxR2) and peroxiredoxin 3 (Prx3), scavenges H
2 O2 and offers protection against oxidative stress. Our previous study showed that TrxR inhibitors resulted in Trx2 oxidation and increased ROS emission from mitochondria. In the present study, we observed that TrxR inhibition also impaired the contractile function of isolated heart. Our studies showed a decrease in the expression of Trx2 in the high glucose-treated H9c2 cardiac cells and myocardium of streptozotocin (STZ)-induced diabetic rats. Overexpression of Trx2 could significantly diminish high glucose-induced mitochondrial oxidative damage and improved ATP production in cultured H9c2 cells. Notably, Trx2 overexpression could suppress high glucose-induced atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) gene expression. Our studies suggest that high glucose-induced mitochondrial oxidative damage can be prevented by elevating Trx2 levels, thereby providing extensive protection to the diabetic heart. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
7. Comparative Transcriptional Analysis of Loquat Fruit Identifies Major Signal Networks Involved in Fruit Development and Ripening Process.
- Author
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Huwei Song, Xiangxiang Zhao, Weicheng Hu, Xinfeng Wang, Ting Shen, and Liming Yang
- Subjects
LOQUAT ,GENETIC transcription in plants ,TRANSCRIPTION factors ,MOLECULAR structure of transcription factors ,PLANT genetics ,BIOCHEMICAL variation ,PHYSIOLOGY - Abstract
Loquat (Eriobotrya japonica Lindl.) is an important non-climacteric fruit and rich in essential nutrients such as minerals and carotenoids. During fruit development and ripening, thousands of the differentially expressed genes (DEGs) from various metabolic pathways cause a series of physiological and biochemical changes. To better understand the underlying mechanism of fruit development, the Solexa/Illumina RNA-seq high-throughput sequencing was used to evaluate the global changes of gene transcription levels. More than 51,610,234 high quality reads from ten runs of fruit development were sequenced and assembled into 48,838 unigenes. Among 3256 DEGs, 2304 unigenes could be annotated to the Gene Ontology database. These DEGs were distributed into 119 pathways described in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. A large number of DEGs were involved in carbohydrate metabolism, hormone signaling, and cell-wall degradation. The real-time reverse transcription (qRT)-PCR analyses revealed that several genes related to cell expansion, auxin signaling and ethylene response were differentially expressed during fruit development. Other members of transcription factor families were also identified. There were 952 DEGs considered as novel genes with no annotation in any databases. These unigenes will serve as an invaluable genetic resource for loquat molecular breeding and postharvest storage. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
8. Stress Sensitivity Is Associated with Differential Accumulation of Reactive Oxygen and Nitrogen Species in Maize Genotypes with Contrasting Levels of Drought Tolerance.
- Author
-
Liming Yang, Fountain, Jake C., Hui Wang, Xinzhi Ni, Pingsheng Ji, Lee, Robert D., Kemerait, Robert C., Scully, Brian T., and Baozhu Guo
- Subjects
CORN genetics ,DROUGHT tolerance ,REACTIVE oxygen species ,AFLATOXINS ,BIOMARKERS - Abstract
Drought stress decreases crop growth, yield, and can further exacerbate pre-harvest aflatoxin contamination. Tolerance and adaptation to drought stress is an important trait of agricultural crops like maize. However, maize genotypes with contrasting drought tolerances have been shown to possess both common and genotype-specific adaptations to cope with drought stress. In this research, the physiological and metabolic response patterns in the leaves of maize seedlings subjected to drought stress were investigated using six maize genotypes including: A638, B73, Grace-E5, Lo964, Lo1016, and Va35. During drought treatments, drought-sensitive maize seedlings displayed more severe symptoms such as chlorosis and wilting, exhibited significant decreases in photosynthetic parameters, and accumulated significantly more reactive oxygen species (ROS) and reactive nitrogen species (RNS) than tolerant genotypes. Sensitive genotypes also showed rapid increases in enzyme activities involved in ROS and RNS metabolism. However, the measured antioxidant enzyme activities were higher in the tolerant genotypes than in the sensitive genotypes in which increased rapidly following drought stress. The results suggest that drought stress causes differential responses to oxidative and nitrosative stress in maize genotypes with tolerant genotypes with slower reaction and less ROS and RNS production than sensitive ones. These differential patterns may be utilized as potential biological markers for use in marker assisted breeding. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
9. Protein Profiles Reveal Diverse Responsive Signaling Pathways in Kernels of Two Maize Inbred Lines with Contrasting Drought Sensitivity.
- Author
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Liming Yang, Tingbo Jiang, Fountain, C. Jake, Scully, T. Brian, Lee, D. Robert, Kemerait, C. Robert, Sixue Chen, and Baozhu Guo
- Subjects
- *
DROUGHT tolerance of corn , *PLANT protein analysis , *PLANT cellular signal transduction , *PROTEIN expression ,EFFECT of stress on corn - Abstract
Drought stress is a major factor that contributes to disease susceptibility and yield loss in agricultural crops. To identify drought responsive proteins and explore metabolic pathways involved in maize tolerance to drought stress, two maize lines (B73 and Lo964) with contrasting drought sensitivity were examined. The treatments of drought and well water were applied at 14 days after pollination (DAP), and protein profiles were investigated in developing kernels (35 DAP) using iTRAQ (isobaric tags for relative and absolute quantitation). Proteomic analysis showed that 70 and 36 proteins were significantly altered in their expression under drought treatments in B73 and Lo964, respectively. The numbers and levels of differentially expressed proteins were generally higher in the sensitive genotype, B73, implying an increased sensitivity to drought given the function of the observed differentially expressed proteins, such as redox homeostasis, cell rescue/defense, hormone regulation and protein biosynthesis and degradation. Lo964 possessed a more stable status with fewer differentially expressed proteins. However, B73 seems to rapidly initiate signaling pathways in response to drought through adjusting diverse defense pathways. These changes in protein expression allow for the production of a drought stress-responsive network in maize kernels. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
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