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The hyporheic zone of riverbed sediments has the potential to attenuate nitrate from upwelling, polluted groundwater. However, the coarse-scale (5 – 10 cm) measurement of nitrogen biogeochemistry in the hyporheic zone can often mask fine-scale (

We examined the influence of river stage on subsurface hydrology and pore water chemistry within the hyporheic zone of a groundwater-fed river during the summer baseflow period of 2011. We found river stage and geomorphologic environment to control chemical patterns in the hyporheic zone. At high river stage, the flux of upwelling water in the shallow sediments (> 20 cm) decreased at samples sites in the upper section of our study reach and increased substantially at sites in the lower section. This differential response is attributed to the contrasting geomorphology of these sub-reaches which affects the rate of the rise and fall of river stage relative to subsurface head. At sites where streamward vertical flux decreased, concentration profiles of a conservative environmental tracer suggest surface water infiltration into the riverbed below depths recorded at low river stage. An increase in vertical flux at sites in the lower sub-reach is attributed to the movement of lateral subsurface waters originating from the adjacent floodplain. This lateral-moving water preserved or decreased the vertical extent of the hyporheic mixing zone observed at low river stage. Down welling surface water appeared to be responsible for elevated dissolved organic carbon (DOC) and Mn concentrations in shallow sediments (0 – 20 cm); however, lateral subsurface flows were probably important for elevated concentrations of these solutes at deeper levels. Results suggest that DOC delivered to hyporheic sediments during high river stage from surface water and lateral subsurface sources could enhance heterotrophic microbial activities. This article is protected by copyright. All rights reserved.

We investigated the accumulation and biogeochemical cycling of organic matter beneath Ranunculus plants in a lowland river. Organic carbon accumulated beneath the plants at a mean rate of 20 mmol C m ―2 h ―1 . Annual gross primary production for both Ranunculus and its biofilm, and the microphytobenthos, could account for 26% of the carbon accumulated. The remainder was attributable to organic carbon in both suspended particulate matter (77%) and that associated with sands saltating along the bottom (33%). Maximum carbon oxidation occurred in spring and early summer and declined thereafter. The efflux of CO 2 was greater than the carbon equivalents due to reduction of O 2 , NO 3 ― and SO 4 2― measured at the surface, which suggested a significant contribution to carbon oxidation from the subsurface and some oxidation via alternative electron acceptors. The peak in carbon oxidation could not be accounted for by either rising temperature or primary production but tracked the quality of recently deposited allochthonous organic matter. The ratio of carbon oxidation to total organic carbon accumulation suggested that 19% of the organic matter deposited was remineralised on an annual basis, although this reached 58% in June. We calculate that a total of 3·6 mol N m ―2 y ―1 was mineralised in the sediment, of which 11% could be accounted for by the measured efflux of NH 4 + . The remainder could be accounted for by the N demand from primary production (67% macrophytes/biofilm; 36% phytobenthos).