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Silicification was a major mode of fossilization in Proterozoic peritidal environments, but marine silica concentrations and the chemical and biological mechanisms that drove microbial silicification and formation of early diagenetic chert in these environments remain poorly constrained. Here, we use taphonomy experiments to demonstrate that photosynthetically active cyanobacteria that are morphologically analogous to the oldest cyanobacterial fossil, Eoentophysalis, mediate the formation of magnesium-rich amorphous silica in seawater that is undersaturated with respect to silica. These results show that microbes in Proterozoic tidal environments may have mediated their own silicification at lower silica concentrations than previously assumed.

Ediacaran sedimentary successions are noted for the preservation of microbes and microbial textures on the surfaces of sandstones and siltstones. Although microorganisms have been preserved in coarse-grained siliciclastic sand throughout geologic history, the exceptional preservation of microbes in Ediacaran sediments suggests the potential for a unique taphonomic window. Here, we identify conditions conducive to the fossilization of filamentous cyanobacteria growing in the presence of siliciclastic sand and demonstrate that the sheaths of filamentous cyanobacteria can become coated by clay minerals within days under oxic conditions. Smooth, extensive mineral coatings develop in the presence of 5.6 to 55.6 mg/L of suspended clay and 0.1 mM or greater concentrations of dissolved silica. Thus, elevated concentrations of seawater silica and the delivery of suspended clays promote microbial preservation on sandy and silty surfaces. These factors likely facilitated microbial fossilization in coarse-grained siliciclastic sand throughout the Ediacaran Period and may have also contributed to microbial fossilization in siliciclastic deposits at other times throughout Earth’s history.

Major lineages of modern eukaryotes, represented primarily by microscopic taxa, are thought to have originated during the Neoproterozoic, but microfossils older than 635 Ma rarely have unambiguous relationships to modern microscopic eukaryotes. Here we report exceptionally preserved 715–635 m.y. old eukaryotic tests in limestone strata of Mongolia. The ∼100-μm-long organic-rich three-dimensional tests have flask-like shapes, constricted necks, distinct and often thickened collars, and flexible walls composed of densely packed alveolar structures. The combined morphological and ultrastructural characters of these Cryogenian tests are remarkably similar to the tests of tintinnids, modern planktonic ciliates. Eukaryotes forming recalcitrant organic or mineral-rich tests before 635 Ma may have increased export and burial fraction of organic carbon, driving an increase in atmospheric oxygen and the subsequent radiation of metazoans.

We formed calcite crusts in the presence and absence of the heterotrophic bacterium Desulfovibrio desulfuricans strain G20 to investigate microbial morphological signatures in fast-accreting carbonate precipitates. Submicrometer- to micrometer-sized pores (micropores) were present and ubiquitous in the G20 crusts but absent in abiotically precipitated crusts. Bacterial micropores resemble inclusions under transmitted light, but have distinct size, biological shapes and patterns (swirling or dendritic) and are distributed differently from common fluid inclusions. We observed similar porosity in both modern and ancient carbonate crusts of putative biotic origin. Our experiments support the microbial origin of micropores and help define specific criteria whereby to recognize these features as biosignatures in the rock record.

Microbial sulfate reduction is thought to stimulate carbonate precipitation in modern stromatolites, yet whether this metabolism was important in shaping Precambrian stromatolites is unknown. Here we use geochemical modeling to suggest that the influence of sulfate reduction on the saturation index of calcite (SI) is negligible when seawater is in equilibrium with high pCO_2, as is thought for the Precambrian. Our laboratory experiments with heterotrophic bacteria in a medium mimicking Precambrian seawater chemistry show that even if sulfate reduction does not significantly change the SI, the presence of bacteria stimulates calcite precipitation over sterile controls by effectively increasing the SI over a pH range from 7.3 to 7.8. Under our experimental conditions, dead cells stimulate in situ carbonate precipitation equally, if not more, than active sulfate-reducing bacteria. Heterogeneous nucleation of calcite by microbial cell material appears to be the driving mechanism that explains this phenomenon.