1. Identification of a novel cuproptosis-related gene signature and integrative analyses in patients with lower-grade gliomas
- Author
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Jia-hao Bao, Wei-cheng Lu, Hao Duan, Ya-qi Ye, Jiang-bo Li, Wen-ting Liao, Yong-chun Li, and Yang-peng Sun
- Subjects
cuproptosis ,lower-grade gliomas ,molecular subtypes ,tumor microenvironment ,immune checkpoint inhibitors ,chemoradiotherapy ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundCuproptosis is a newly discovered unique non-apoptotic programmed cell death distinguished from known death mechanisms like ferroptosis, pyroptosis, and necroptosis. However, the prognostic value of cuproptosis and the correlation between cuproptosis and the tumor microenvironment (TME) in lower-grade gliomas (LGGs) remain unknown.MethodsIn this study, we systematically investigated the genetic and transcriptional variation, prognostic value, and expression patterns of cuproptosis-related genes (CRGs). The CRG score was applied to quantify the cuproptosis subtypes. We then evaluated their values in the TME, prognostic prediction, and therapeutic responses in LGG. Lastly, we collected five paired LGG and matched normal adjacent tissue samples from Sun Yat-sen University Cancer Center (SYSUCC) to verify the expression of signature genes by quantitative real-time PCR (qRT-PCR) and Western blotting (WB).ResultsTwo distinct cuproptosis-related clusters were identified using consensus unsupervised clustering analysis. The correlation between multilayer CRG alterations with clinical characteristics, prognosis, and TME cell infiltration were observed. Then, a well-performed cuproptosis-related risk model (CRG score) was developed to predict LGG patients’ prognosis, which was evaluated and validated in two external cohorts. We classified patients into high- and low-risk groups according to the CRG score and found that patients in the low-risk group showed significantly higher survival possibilities than those in the high-risk group (P
- Published
- 2022
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