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The ability of pyridinium chloride (PC) to selectively quench alternant as opposed to nonalternant polycyclic aromatic hydrocarbons (PAHs) in organized media is examined. PC was previously shown to be a selective quenching agent of alternant PAHs in neat polar solvents. Carboxylate-terminated poly(amido) amine (PAMAM-CT) dendrimers and anionic surfactants – sodium dodecanoate (SD), sodium octanoate (SO), and sodium dodecylsulfate (SDS) – were chosen as the solubilizing media for this study. Selective quenching of alternant PAHs is observed in the presence of the SDS and SO micelles. However, the extent of PAH quenching in SO is significantly reduced compared to PAHs dissolved in either water or SDS micelles. In the case of the smaller generation 4.5 (G4.5) PAMAM-CT dendrimers, PC was prevented from quenching both alternant and nonalternant PAHs to any appreciable extent. The dendrimer is able to “protect” the PAHs from the PC quencher that resides at the dendrimer surface. Both, SD and G5.5 PAMAM-CT precipitated out of solution with the addition of PC. Differences between traditional micelles and “unimolecular micelle” dendrimers were also examined. These studies further confirm that the PAHs did not reside in the “analogous” palisade region of the dendrimers as they do in micelles. The PAHs must reside in the outermost branches of the dendrimer, but sufficiently far enough away from the charged surface groups, where PC associated, to prevent fluorescence quenching. This work further illustrates the differences between “unimolecular micelle” dendrimers and traditional micelles. [ABSTRACT FROM AUTHOR]

Applicability of the nitromethane selective quenching rule for discriminating between alternant versus nonalternant polycyclic aromatic hydrocarbons (PAHs) is examined for 20 representative PAH solutes dissolved in micellar sodium dodecylsulfate (SDS) + cetyltrimethylammonium bromide (CTAB), SDS + dodecyltrimethylammonium bromide (DTAB), SDS + Brij-35, and SDS + sodium octanoate (SO) mixed surfactant solvent media. Experimental results show that nitromethane quenched fluorescence of all 8 alternant PAHs studied in the four different solvent systems. Unexpected quenching behavior was observed, however, in the case of nonalternant PAHs. Nitromethane quenched fluorescence emission of nonalternant PAHs dissolved in the SDS + SO solvent media, which is contrary to the selective quenching rule. In the case of the mixed anionic + cationic surfactant solvent media, nitromethane quenching selectivity was restored at concentration ratios of approximately 4 : 1 (anionic:cationic) or less. [ABSTRACT FROM AUTHOR]

Commercially available, replaceable sieving matrices and their solvent modulated forms were evaluated for use in on-the-fly fluorescence lifetime detection of dye-labeled DNA fragments in capillary electrophoresis. The fragments were labeled with dyes that can be excited by the 488 nm line of an argon ion laser and have lifetimes in the range of 0.8 ns to 3.8 ns. The sieving matrices and buffer systems included poly(vinylpyrrolidone) (PVP), poly(ethyleneoxide) (PEO), hydroxyethylcellulose (HEC), Tris-borate-EDTA (TBE) and Tris-TAPS-EDTA buffers modified with DMSO and formamide. Selection of the optimal sieving matrix is based on the separation efficiency and the enhancement of lifetime resolution of DNA fragments. Best results for both electrophoretic resolution and lifetime detection were obtained using a poly(ethyleneoxide)/TBE gel buffer in the presence of 10% formamide. [ABSTRACT FROM AUTHOR]