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In recent decades, fractional order calculus has become an important mathematical tool for effectively solving complex problems through better modeling with the introduction of fractional differential/integral operators; fractional order swarming heuristics are also introduced and applied for better performance in different optimization tasks. This study investigates the nonlinear system identification problem of the input nonlinear control autoregressive (IN-CAR) model through the novel implementation of fractional order particle swarm optimization (FO-PSO) heuristics; further, the key term separation technique (KTST) is introduced in the FO-PSO to solve the over-parameterization issue involved in the parameter estimation of the IN-CAR model. The proposed KTST-based FO-PSO, i.e., KTST-FOPSO accurately estimates the parameters of an unknown IN-CAR system with robust performance in cases of different noise scenarios. The performance of the KTST-FOPSO is investigated exhaustively for different fractional orders as well as in comparison with the standard counterpart. The results of statistical indices through Monte Carlo simulations endorse the reliability and stability of the KTST-FOPSO for IN-CAR identification. [ABSTRACT FROM AUTHOR]