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Brassicaceous plants rich in glucosinolates have been used as biofumigants for the management of soilborne pathogens. Efficacy of Brassica plant tissue has mainly been attributed to toxic isothiocyanates released upon the hydrolysis of glucosinolates. Management of Phytophthora cinnamomi, the causal agent of oak root rot in rangeland ecosystems using biofumigation, is promising, but requires further validation. The biofumigation activity of 14 brassicaceous plants was evaluated under experimental conditions. All evaluated plants rich in sinigrin suppressed (100%) the mycelial growth of P. cinnamomi, while plants rich in aromatic or other aliphatic glucosinolates had little or no suppressive effect. Simulating soil amendment in field conditions, the effects on natural soil artificially infested with P. cinnamomi chlamydospores were examined with Brassica juncea, Eruca vesicaria and Lepidium sativum, three species with different glucosinolate profiles. Only B. juncea decreased the viability of chlamydospores significantly in comparison with untreated soil only 1 day after biofumigation, whereas E. vesicaria needed 8 days to reach significance and L. sativum had no effect at all. Despite the decreases in soil inoculum, biofumigation with B. juncea did not prevent the root infections in a highly susceptible host ( Lupinus luteus). However, biofumigation with plants rich in sinigrin, such as B. juncea, decreased P. cinnamomi soil inoculum under the experimental minimum threshold for oak disease expression. Although biofumigation should be considered as an effective measure to be incorporated in integrated control of the oak disease, biofumigation by itself would not be effective enough for the substantial suppression of P. cinnamomi inoculum. [ABSTRACT FROM AUTHOR]

Two studies were undertaken in a young New Zealand Pinus radiata stand to find a biological control agent for armillaria root disease caused by Armillaria novae-zelandiae. Fresh thinning stumps were inoculated with saprophytic basidiomycete species as wooden dowel cultures or as homogenized aqueous mycelial suspensions, while all stumps were also inoculated with dowel cultures of A. novae-zelandiae. After a period of between one and two years, no differences were found among test fungi in the percentage of Armillaria species isolated from stumps. However, inoculation of Stereum sanguinolentum as homogenate, and of Phlebiopsis gigantea, Sistotrema brinkmannii, Hypholoma acutum and Rigidoporus concrescens as dowel cultures, significantly increased their isolation incidence in comparison with stumps not treated by these species. Phlebiopsis gigantea, Resinicium bicolor and R. concrescens were also isolated with greater frequency nearer to their dowel inoculation points. Results suggest that P. gigantea and S. sanguinolentum should be included in further testing. However, a future trial is likely to be more effective if evaluation is directed towards the portion of the stump below the soil surface, particularly the root system. [ABSTRACT FROM AUTHOR]

Armillaria species display diverse ecological roles ranging from beneficial saprobe to virulent pathogen. Armillaria solidipes (formerly A. ostoyae), a causal agent of Armillaria root disease, is a virulent primary pathogen with a broad host range of woody plants across the Northern Hemisphere. This white-rot pathogen grows between trees as rhizomorphs and attacks sapwood as mycelial fans under the bark. Armillaria root disease is responsible for reduced forest productivity due to direct tree mortality and non-lethal infections that impact growth. Here, we characterize a transcriptome of a widespread, virulent genet (vegetative clone) of A. solidipes isolated from a mycelial fan on a natural grand fir ( Abies grandis) sapling in northern Idaho, USA. cDNA from polyA+-purified total RNA was sequenced using a single-end read approach on the Illumina GAIIx platform which generated 24 170 384 reads. A BLASTx search against the NCBI nr database using 39 943 de novo assembled contigs resulted in 24 442 sequences with significant hits (e-value < 1e−3), predominantly to fungi (85%). A filtered data set of 20 882 assembled transcripts that encoded putative homologous fungal proteins was created and used for all subsequent analyses. Signal P identified 10 668 putative signal peptides from these fungal transcripts, and 14 360 were annotated with gene ontology terms. Several sequences showed strong homology to annotated genes with functions in pathogenesis, specifically those involved in plant cell wall degradation and response to the post-infection host environment. This transcriptome contributes to the growing body of resources for studies on fungal pathogens of woody plants, and our results provide useful insights towards identifying specific genes with potential roles associated with pathogenesis and other metabolic functions. [ABSTRACT FROM AUTHOR]

Incidence of peach [ Prunus persica (L.) Batsch] tree mortality attributed to Armillaria root disease was assessed from 2009 to 2011 in 15 orchards in the State of Mexico, Mexico. Incidence increased gradually every year of assessment, reaching average values of 9.7, 15.3 and 20.3% tree mortality and 23.2, 24.7 and 28.3% disease-impacted area of the orchards during 2009, 2010 and 2011, respectively. The cultivars 'Nemaguard' and 'Criollo of La Goleta', a local rootstock used in the region, were both susceptible to the disease. To identify species of Armillaria isolated from infected peach trees, two nuclear rDNA regions (partial 5.8S-ITS2- LSU D-domains and partial 3′ LSU-IGS1) and the translation elongation factor-1α ( tef-1α) gene were sequenced and compared with sequences of known Armillaria species. DNA sequence analysis from 49 Armillaria isolates revealed that five isolates (10.2%) were Armillaria mellea and eight isolates (16.3%) were Armillaria gallica. DNA sequences from the remaining 36 isolates (73.5%) showed no close similarity to Armillaria sequences in GenBank, and apparently represent an undescribed Armillaria species. This undescribed species was the most widely distributed in the region of study. Separate phylogenetic analyses of the LSU region ( D1- D3 domains concatenated with the partial 3′ end) and the tef-1α region show that the undescribed species is quite distinct from other Armillaria spp. reported in North America. [ABSTRACT FROM AUTHOR]

Ponderosa pine ( Pinus ponderosa) in the Black Hills National Forest, SD, USA, was surveyed for Armillaria root disease (ARD). The root pathogen Armillaria ostoyae occurred on ponderosa pine seedlings, saplings, pole-size trees and large-diameter trees. The mean incidence of aboveground disease symptoms by stem count was low (0.2%), but in certain areas, the incidence was higher, affecting the regeneration success and tree longevity. Symptomatic ponderosa pine were in areas characterized by having higher elevation, greater annual precipitation, more seedlings, bigger large-diameter trees and greater odds of past harvesting activity than in areas without root disease. Stump density was positively spatially correlated with root disease incidence. No particular soil type was related to disease occurrence; though, in areas with symptomatic trees, soil available water holding capacity (AWC) was greater and soil permeability was less where root disease was present. Spatial analysis confirmed the relationships found in linear correlations, with soil AWC and stump density positively and soil permeability negatively correlated with per cent infected stems ha−1 and basal area infected. [ABSTRACT FROM AUTHOR]

Results are presented from several studies on the epidemiology of Armillaria ostoyae in Douglas-fir plantations in the interior cedar-hemlock (ICH) biogeoclimatic zone of British Columbia. Two plantations were monitored for mortality by A. ostoyae and other agents for 35 years after establishment. In these and other plantations ranging in age from 7 to 32 years, one or more of the following factors were determined: source of inoculum, mode of spread and characteristics of lesions on roots of excavated trees; symptom expression in relation to tree age and damage to the root system and years from initial infection to death on trees killed by the fungus. Mortality from A. ostoyae began in both plantations about 5 years after planting, reaching 30% in one and 11% in the other after 35 years. The spatial pattern of mortality was similar to that reported from New Zealand, France and South Africa; however, the temporal pattern differed, beginning later and, instead of declining, continuing at a nearly constant rate to the present. To age 10, nearly all infections were initiated by rhizomorphs; as plantations aged, the proportion of infections occurring at root-root contacts increased. In seven plantations, in moist and wet subzones of the ICH, from 23 to 52% of Douglas-firs had root lesions, with the higher incidences occurring on moist sites. The occurrence of aboveground symptoms, reduced leader growth and basal resinosis, was related to the percentage of root length colonized by A. ostoyae on trees with more than 30% of root length killed. Average time from infection to death increased from 1 to 2 years at age 6 to 22 years at age 33. The outlook for timber yield from Douglas-fir plantations in the cedar-hemlock zone is discussed. Management alternatives for reducing damage from A. ostoyae when regenerating sites are reviewed. [ABSTRACT FROM AUTHOR]

Species of Armillaria were identified from 645 isolates obtained in a nation-wide survey in Albania. The material was collected from ca. 250 permanent plots, established for monitoring forest health, and from forests and orchards attacked by Armillaria. Armillaria mellea s.s. occurred on several coniferous and broadleaved trees in most areas examined, although it was absent above 1100-1200 m in northern Albania. This species damaged Abies and Quercus spp. and, to a lesser extent, other forest trees. Armillaria mellea was also commonly recorded causing damage in orchards and vineyards. Armillaria gallica was a common saprophyte or weak pathogen in coniferous and deciduous forests at altitudes from 600 to 1600 m, and less commonly on oaks at lower altitudes. Armillaria ostoyae was rare in central and southern Albania, but common in northern Albania, causing significant damage to pine and other conifers, mostly at altitudes from 600 to 1800 m. Armillaria cepistipes was recorded at altitudes from 800 to 1800 m as a saprophyte or weak pathogen on conifers and deciduous trees, mostly in beech and silver fir forests. Armillaria tabescens was found in oak forests at altitudes from sea level to 900 m. In orchards, A. tabescens occasionally attacked almond and pear trees. Armillaria borealis was found in a few locations in northern Albania, at altitudes from 800 to 1800 m. [ABSTRACT FROM AUTHOR]

In a search for alternative methods for managing armillaria root disease in Pinus radiata plantations in New Zealand, a thinning trial was established in a 1985 planted stand infested by Armillaria novae-zelandiae. The incidence of chronic (non-lethal) infection rose significantly following a first thinning at age 7 years that provided additional inoculum in the form of colonized stumps. However, this effect diminished before age 19 years when the small stumps had decomposed and, contrary to expectations, a further increase in infection did not follow a second thinning at age 13.5 years, despite a high incidence of larger colonized second thinning stumps. Apparently the increased vigour and associated resistance in the released older trees was sufficient to counter any increase in inoculum potential following treatment. It therefore now appears that thinning may not be detrimental to the final crop volume in contemporary diseased second-rotation plantations. However, this treatment furnishes no disease control benefit, and should still be deployed judiciously in heavily infested stands. There was a small, but significant reduction in volume growth on the more severely infected trees during the first 13 years in this trial, but on the larger trees later in the rotation at age 19 years there was no difference in stem volume between infection severity categories. A previous assessment based only on the earlier data therefore overestimates the impact of Armillaria in present and future pine plantations in New Zealand. Nevertheless, its widespread distribution and its demonstrated pathogenicity indicate that forest owners should be conscious of the presence of Armillaria during plantation management. [ABSTRACT FROM AUTHOR]

Options are currently limited for the management of armillaria root disease in plantations of Pinus radiata in New Zealand. One possibility may be to plant genetically resistant clones on infested sites. Studies were undertaken over four consecutive years to examine variation in inherent resistance in P. radiata. Rooted cuttings in pots were treated with wood segment cultures of Armillaria novae-zelandiae and disease symptoms were monitored during the following summer. Disease was severe among inoculated cuttings in all studies, with an overall mean of 54% plants infected. There were significant differences in both infection and mortality between studies and between four pathogen isolates, but not among 25 radiata pine clones. The rate at which symptoms first appeared also did not vary significantly between clones. Results suggest that while genetic resistance cannot be ruled out as an option in P. radiata, potential gains may be limited in extent and costly to achieve. [ABSTRACT FROM AUTHOR]

In response to an infection, traumatic resin canals (TRCs) are formed in the roots of many conifers, which may be used to determine the timing and sequence of infection events essential for epidemiological studies of root diseases. Juvenile Douglas-fir ( Pseudotsuga menziesii) tree roots at coastal and interior sites in British Columbia were wounded at various times of the year or were inoculated with an isolate of Armillaria ostoyae, and root sections were taken to determine the timing and extent of TRC formation. Naturally infected Douglas-fir were also examined to determine the extent of the TRCs in infected and uninfected roots on infected trees and in the lower stem. Wounds made in March and October had poor or no TRC formation while the summer wounds responded strongly and were associated with resin soaking. Roots wounded in October did not respond until the following year in all trees except one. Trees produced TRCs and resin soaked tracheids at all times in response to the fungal inoculations. The most striking difference between wounding or fungal inoculation was the multiple bands of TRCs produced in response to the fungus. TRCs at natural A. ostoyae infections were found 92% of time in roots at the stem junction and 74% of the time in the stem at soil line. TRCs were produced in uninfected roots on infected trees but disappeared with increasing distance from the initiating lesion. TRCs can be used to time yearly and seasonal root infections when they can be traced from an identified lesion. [ABSTRACT FROM AUTHOR]

Armillaria root rot is a well-known disease on a wide range of plants, world-wide. In Ethiopia, the disease has previously been reported on Pinus spp., Coffea arabica and on various native hardwoods. The causal agent of the disease has been attributed to Armillaria mellea, a species now known to represent a complex of many different taxa. The aim of this study was to determine the extent of Armillaria root rot and the identity of the Armillaria sp. in Ethiopian plantations. As part of a plantation disease survey in 2000 and 2001, samples were collected in plantations at and around Munessa Shashemene, Wondo Genet, Jima, Mizan and Bedele, in south and south-western Ethiopia. Basidiocarps were collected and their morphology studied. Morphological identification was confirmed by sequencing the intergenic spacer (IGS-1) region of the ribosomal rRNA operon and comparing data with published sequences of Armillaria spp. Armillaria isolates were collected from Acacia abyssinica, Pinus patula, Cedrela odorata and Cordia alliodora trees. Sporocarps were found on stumps of native Juniperus excelsa. Basidiocarp morphology and sequence data suggested that the fungus in Ethiopia is similar to that causing disease of Pinus spp. in South Africa and previously identified as A. fuscipes. This identification was confirmed for all isolates, based on sequence data. Armillaria fuscipes is known to be common in southern Africa. Its widespread occurrence in Ethiopia suggests that it is also the major cause of Armillaria root rot in that country. [ABSTRACT FROM AUTHOR]

Periderm formation was studied in bark samples collected from the roots of western larch ( Larix occidentalis) and Douglas-fir ( Pseudotsuga menziesii) trees infected with Armillaria ostoyae. Necrophylactic periderms were formed in advance of infection and successfully restricted continued fungal spread in 68 and 45% of the samples collected from 10- and 27-year-old western larch, respectively. However, all periderms formed in 11- and 25-year-old Douglas-fir had been breached by the advancing fungus. In both species, necrophylactic periderms were commonly breached at the junction of the periderm with the vascular cambium. In western larch, stone phellem often comprised the external phellem layer of necrophylactic periderms with multiple bands of phellem. In 27-year-old western larch, infection was often confined to discrete lesions bounded by multiple periderms with multiple bands of phellem. In both tree species, phellem production was greater in response to infection than in response to abiotic wounding. [ABSTRACT FROM AUTHOR]

The sequence of events leading to necrophylactic periderm formation was studied throughout the year following the abiotic wounding of the non-infected roots of 10- and 27-year-old western larch ( Larix occidentalis) and 11- and 25-year-old Douglas-fir ( Pseudotsuga menziesii) trees that were infected with Armillaria ostoyae. The sequence was the same for both ages and species of trees. Wound repair was more rapid in the summer compared with the spring and autumn. Following cell hypertrophy, a zone of lignified impervious tissue was in the initial stages of formation within 10 days of wounding in the summer and 14 days in the spring or autumn. The new phellogen produced a layer of phellem three to four rows of cells thick after 20 days in the summer or 40 days in the spring. Modified cells abutting the inner boundary of the impervious zone frequently developed thick lignified abaxial walls and thin suberized adaxial walls. A typical exophylactic periderm in healthy root bark tissue of both western larch and Douglas-fir consisted of stone phellem one to four rows of cells thick and a layer of thin-walled phellem three to six rows of cells thick in western larch and two to three rows thick in Douglas-fir, a single row of phellogen cells and one to three rows of phelloderm cells. Mature thin-walled phellem cells had pigmented contents, red in western larch and light brown in Douglas-fir. In response to wounding, 27-year-old western larch and 25-year-old Douglas-fir developed necrophylactic periderms with annual bands of phellem. The bands included a layer of phellem that was six to 12 and nine to 15 rows of cells thicker than the layer of phellem observed in the respective naturally developed exophylactic periderms. Fifty days following wounding in the summer, stone phellem, one to three rows of cells thick, was observed in the necrophylactic periderm of 10-year-old trees. When fully developed, the necrophylactic periderm in 27-year-old western larch also had a layer of stone phellem three to five rows of cells thick in each band. Stone phellem development was only sporadic in 25-year-old Douglas-fir. Wounds in the winter showed no signs of activity associated with repair until dormancy broke in the spring. [ABSTRACT FROM AUTHOR]

The basidiomycetes Armillaria cepistipes and Armillaria ostoyae frequently occur in the same forest stand. In this study, we determined the virulence of 20 isolates of A. cepistipes and 16 isolates of A. ostoyae on four different provenances of 2-year-old Norway spruce ( Picea abies). Within 30 months after inoculation, 1.1 and 19.1% of the seedlings inoculated with A. cepistipes and A. ostoyae, respectively, had died or were dying. The incidence of dead and dying seedlings varied between 3 and 49% among the A. ostoyae isolates. The virulence of an isolate was positively correlated to its ability to produce rhizomorphs. One Norway spruce provenance showed significantly lower susceptibility to A. ostoyae than the other three. Rhizomorphs of both Armillaria species were attached to the root surface. The attached rhizomorphs of A. ostoyae, however, were associated with significantly more lesions. The virulence of the isolates was not correlated with their wood-degrading capability for either of the Armillaria species. [ABSTRACT FROM AUTHOR]

Summary Armillaria root disease (ARD) occurrence on ponderosa pine (Pinus ponderosa ) is not uniform in the Black Hills of South Dakota, USA. To help manage this ecosystem, a model was developed to predict the probability of observing diseased trees. A kernel density estimator was used to estimate the probability of observing ARD using presence data from two field studies. An eight-parameter regression equation using topographical data (Universal Trans Mercator coordinates, elevation and slope) derived from a Digital Elevation Model was fitted to the estimated probabilities and the residuals kriged to produce correction factors for the regression estimates. The final model, which had a relative mean squared error of 0.128, identified two peaks of high probability in the north-west portion of the Black Hills and several peaks of moderate probability throughout the Black Hills. [ABSTRACT FROM AUTHOR]

We investigated an Armillaria root disease centre in a 60-year-old, naturally regenerated Pinus sylvestris stand located at 1250 m altitude in Sinop province in northern Turkey. Based on sequence analysis of the internal transcribed spacer region of the rDNA, the mycelial fans sampled from the infected trees were Armillaria ostoyae. Multilocus genotyping indicated that the fans belonged to a single genet, at least 0.2 ha in size. Drought as a predisposing factor is discussed. The study area received 50-70 and 25-50% of the normal precipitation in May, June and August in 2009 and in August and September in 2010, respectively. Moreover, earlier excavation work to prepare a forest road had probably disrupted the water table in the affected stand. [ABSTRACT FROM AUTHOR]