37 results on '"Amidase"'
Search Results
2. LambdaSa2 prophage endolysin requires Cpl-7-binding domains and amidase-5 domain for antimicrobial lysis of streptococci.
- Author
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Donovan, David M. and Foster-Frey, Juli
- Subjects
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STAPHYLOCOCCUS aureus , *STREPTOCOCCUS , *BACTERIOPHAGES , *AMIDASES , *PEPTIDOGLYCANS , *LIVESTOCK diseases , *ANTIBIOTICS , *PATHOGENIC microorganisms , *GLYCOSIDASES , *ANTI-infective agents , *HOMOLOGY (Biology) - Abstract
Streptococcal pathogens contribute to a wide variety of human and livestock diseases. The routine use of antibiotics to battle these pathogens has produced a new class of multidrug-resistant streptococci. Thus, there is a need for new antimicrobials. Bacteriophage endolysins (peptidoglycan hydrolases) comprise one group of new antimicrobials that are reportedly refractory to resistance development. The LambdaSa2 prophage endolysin gene was recently isolated from a Group B streptococcal genome, expressed on an Escherichia coli plasmid, and shown by homology screening and biochemical analysis to harbor an amidase-5 (endopeptidase) domain, an amidase-4 (glycosidase) domain, and two Cpl-7 cell wall-binding domains. In this study, turbidity reduction and plate lysis assays indicate that this hydrolase shows strong lytic activity toward Streptococcus pyogenes, Streptococcus dysgalactiae, Streptococcus uberis, Streptococcus equi, GES, and GGS. Deletion analysis indicates that the N-terminal endopeptidase domain with both Cpl-7 domains can lyse with a higher specific activity than the full-length protein (against some strains). This dual Cpl-7 domain truncated version also shows weak lytic activity against methicillin-resistant Staphylococcus aureus (MRSA) and the coagulase negative staphylococci, Staphylococcus xylosus. The truncated constructs harboring the glycosidase domain are virtually inactive, showing only minimal activity on plate lysis assays. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
3. Cloning, sequence analysis and expression of the gene encoding a novel wide-spectrum amidase belonging to the amidase signature superfamily from Achromobacter xylosoxidans
- Author
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Cai, Gang, Zhu, Songcheng, Wang, Xuejuan, and Jiang, Weihong
- Subjects
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AMIDASES , *CEPHALOSPORINS , *ENZYMES , *ESCHERICHIA coli - Abstract
Abstract: Amidases are very important enzymes for industrial biocatalysis. We scored a novel amidase by screening the Achromobacter xylosoxidans gene library with cephalosporin analogous amides. The gene coding for the enzyme, designated ana, was cloned, sequenced and overexpressed in Escherichia coli. Sequence analysis of ana showed it to be an amidase signature family member. Interestingly, we noted that almost all Ana homologous amidases are from human pathogens responsible for chronic lung infections. Knowing the genetic context of Ana and its homologous amidases, we suggest that they could be a part of transposon structure. Ana can efficiently hydrolyze a series of cephalosporin analogous amides, including amides with an aninine, p-nitro-aninine, and β-naphthylamine moiety, while cephalosporin could not serve as its substrate. [Copyright &y& Elsevier]
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- 2005
- Full Text
- View/download PDF
4. The autolytic activity of the recombinant amidase of Staphylococcus saprophyticus is inhibited by its own recombinant GW repeats
- Author
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Hell, Wolfgang, Reichl, Sylvia, Anders, Agnes, and Gatermann, Sören
- Subjects
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STAPHYLOCOCCUS , *AMIDASES , *ESCHERICHIA coli - Abstract
The Aas (autolysin/adhesin of Staphylococcus saprophyticus) is a multifunctional surface protein containing two enzymatic domains an N-acetyl-muramyl-L-alanine amidase, an endo-β-N-acetyl-D-glucosaminidase, and two different regions of repetitive sequences, an N-terminal and a C-terminal repetitive domain. The C-terminal repetitive domain is built up by the repeats R1, R2 and R3, which interconnect the putative active centers of the amidase and glucosaminidase. To investigate the influence of the C-terminal repeats and the N-terminal repeats on the amidase activity, the repetitive domains and fragments of them were cloned and expressed in Escherichia coli. The influence of the different fragments on the activity of the recombinant amidase of the Aas, consisting of the active center of the enzyme and repeat R1, was investigated in a turbidimetric microassay. The different fragments derived from the C-terminal repeats inhibited the amidase activity, while the N-terminal repeats did not influence the activity of the enzyme. The inhibiting activity increased with the number of GW repeats the recombinant fragment contained. Thus we conclude, that the C-terminal GW repeats and not the N-terminal repeats are necessary for the cell wall targeting and the autolytic function of the amidase. [Copyright &y& Elsevier]
- Published
- 2003
- Full Text
- View/download PDF
5. Escherichia coliglutathionylspermidine synthetase/amidase: phylogeny and effect on regulation of gene expression
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Weiping Chen, Manas K. Chattopadhyay, and Herbert Tabor
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Genetics ,Regulation of gene expression ,Spermidine ,Gene Expression Regulation, Bacterial ,Biology ,medicine.disease_cause ,Microbiology ,Article ,Homology (biology) ,Amidohydrolases ,Amidase ,Biochemistry ,Amide Synthases ,Phylogenetics ,Pyrimidine metabolism ,Escherichia coli ,medicine ,Molecular Biology ,Gene ,Phylogeny ,Sulfur utilization - Abstract
Glutathionylspermidine synthetase/amidase (Gss) and the encoding gene (gss) have only been studied in Escherichia coli and several members of the Kinetoplastida phyla. In the present article, we have studied the phylogenetic distribution of Gss and have found that Gss sequences are largely limited to certain bacteria and Kinetoplastids and are absent in a variety of invertebrate and vertebrate species, Archea, plants, and some Eubacteria. It is striking that almost all of the 75 Enterobacteria species that have been sequenced contain sequences with very high degree of homology to the E. coli Gss protein. To find out the physiological significance of glutathionylspermidine in E. coli, we have performed global transcriptome analyses. The microarray studies comparing gss(+) and Δgss strains of E. coli show that a large number of genes are either up-regulated (76 genes more than threefold) or down-regulated (35 genes more than threefold) by the loss of the gss gene. Most significant categories of up-regulated genes include sulfur utilization, glutamine and succinate metabolism, polyamine and arginine metabolism, and purine and pyrimidine metabolism.
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- 2012
6. Cloning and expression of a mureinolytic enzyme from the mycobacteriophage TM4
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R.P. Ross, Aidan Coffey, Olivia McAuliffe, Máire Begley, Jim O'Mahony, Marine Henry, Fiona Maher, and Horst Neve
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Membrane permeability ,Mycobacteriophage ,Lysin ,Biology ,Molecular cloning ,medicine.disease_cause ,Microbiology ,Molecular biology ,Amidase ,Biochemistry ,Gene expression ,Genetics ,medicine ,Molecular Biology ,Polyacrylamide gel electrophoresis ,Escherichia coli - Abstract
In this study, we describe the characterization, cloning, expression and purification of the lysin A gene of the mycobacteriophage TM4. The gene TM4_gp29 (gp29) is a 1644-bp gene that codes for a 58.6-kDa protein and contains peptidoglycan recognition protein, Zn-binding and amidase catalytic domains. The gene was cloned into Escherichia coli using the 'His-Tag' pQE60 vector. After affinity chromatography-mediated purification, the protein was concentrated and visualized using sodium dodecyl sulphate polyacrylamide gel electrophoresis. Evidence of peptidoglycan-degrading activity was observed initially by a chloroform assay and later by conventional zymogram analysis.
- Published
- 2010
7. Utilization of aliphatic nitriles under haloalkaline conditions byBacillus alkalinitrilicussp. nov. isolated from soda solonchak soil
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Sander van Pelt, Tatjana P. Tourova, and Dimitry Y. Sorokin
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Nitrile ,Stereochemistry ,Bacillus ,Sodium Chloride ,Microbiology ,Russia ,Amidase ,Hydrolysis ,chemistry.chemical_compound ,Species Specificity ,Nitrile hydratase ,Nitriles ,Genetics ,Alkaliphile ,Molecular Biology ,Phylogeny ,Soil Microbiology ,Spores, Bacterial ,Strain (chemistry) ,biology ,Hydrogen-Ion Concentration ,biology.organism_classification ,Phenotype ,Sodium Bicarbonate ,Biochemistry ,chemistry ,Soil microbiology - Abstract
Enrichment with isobutyronitrile as the sole carbon, energy and nitrogen source at pH 10, using soda solonchak soils as an inoculum, resulted in the selection of a binary culture consisting of two different spore-forming phenotypes. One of them, strain ANL-iso4, was capable of growth with isobutyronitrile as a single substrate, while the other phenotype only utilized products of isobutyronitrile hydrolysis, such as isobutyroamide and isobutyrate. Strain ANL-iso4 is an obligate alkaliphile and a moderately salt-tolerant bacterium. Apart from isobutyronitrile, it grew on other (C3-C6) aliphatic nitriles at pH 10. Resting cells of ANL-iso4 actively hydrolyzed a number of aliphatic and arylaliphatic nitriles and their corresponding amides. The latter, together with the intermediate formation of amides during nitrile hydrolysis, indicated the presence of a nitrile hydratase/amidase system in the novel bacterium. Although present in an alkaliphilic bacterium, both nitrile- and amide-hydrolyzing activities had a pH optimum within the neutral range, probably due to their intracellular localization. On the basis of phenotypic and phylogenetic analyses, strain ANL-iso4 is proposed as a new species Bacillus alkalinitrilicus sp. nov.
- Published
- 2008
8. Characterization of the catalytic activity of the γ-phage lysin, PlyG, specific forBacillus anthracis
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Hitomi S. Kikkawa, Jiro Yasuda, Takuya Ueda, and Shinichi Suzuki
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Molecular Sequence Data ,Lysin ,Bacillus Phages ,Microbiology ,Amidohydrolases ,Amidase ,Bacteriophage ,Viral Proteins ,Bacterial Proteins ,Catalytic Domain ,Genetics ,Amino Acid Sequence ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology ,Sequence Deletion ,Bacillaceae ,biology ,Autolysin ,N-Acetylmuramoyl-L-alanine Amidase ,biology.organism_classification ,Protein Structure, Tertiary ,Bacillus anthracis ,Amino Acid Substitution ,Biochemistry ,Mutagenesis, Site-Directed ,Sequence Alignment ,Protein Binding ,Binding domain - Abstract
Bacillus anthracis causes anthrax, a lethal disease affecting humans that has attracted attention due to its bioterrorism potential. PlyG is a lysin of gamma-phage, which specifically infects B. anthracis and lyses its cell wall. PlyG contains a T7 lysozyme-like amidase domain, which appears to be the catalytic domain, in the N-terminal region and has a high degree of sequence similarity with PlyL, which is an N-acetylmuramoyl-l-alanine amidase encoded by the B. anthracis genome. Here, we demonstrated that two amino acid residues of PlyG, H29 and E90, are necessary for its catalytic activity in B. anthracis. These residues are structurally analogous to residues whose mutation in T7 lysozyme abolished its catalytic activity. A C-terminal deletion mutant of PlyG lacking the core sequence for binding to B. anthracis showed completely abolished binding activity, unlike PlyL, despite high sequence similarity with PlyL in the N-terminal region. This suggests that the C-terminal binding domain, as well as the N-terminal catalytic domain, is essential for the catalytic activity of PlyG. Our observations provide new insights into the mechanism of specific catalysis of PlyG in B. anthracis and may contribute to the establishment of new methods for anthrax therapy.
- Published
- 2008
9. Tail-associated structural protein gp61 ofStaphylococcus aureusphage ÏMR11 has bifunctional lytic activity
- Author
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Jumpei Uchiyama, Koichi Honke, Hiroyoshi Takatsuji, Iyo Takemura, Mohammad Rashel, Hiroshi Hoshiba, Takako Ujihara, and Shigenobu Matsuzaki
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Staphylococcus aureus ,Immunoelectron microscopy ,Lysin ,medicine.disease_cause ,Microbiology ,Amidohydrolases ,Amidase ,Bacteriophage ,Gene product ,Bacteriolysis ,Protein structure ,Genetics ,medicine ,Cloning, Molecular ,Microscopy, Immunoelectron ,Molecular Biology ,Viral Structural Proteins ,biology ,Virion ,biology.organism_classification ,Molecular biology ,Protein Structure, Tertiary ,Lytic cycle ,Muramidase ,Staphylococcus Phages - Abstract
A tailed bacteriophage, phi MR11 (siphovirus), was selected as a candidate therapeutic phage against Staphylococcus aureus infections. Gene 61, one of the 67 ORFs identified, is located in the morphogenic module. The gene product (gp61) has lytic domains homologous to CHAP (corresponding to an amidase function) at its N-terminus and lysozyme subfamily 2 (LYZ2) at its C-terminus. Each domain of gp61 was purified as a recombinant protein. Both the amidase [amino acids (aa) 1-150] and the lysozyme (aa 401-624) domains but not the linker domain (aa 151-400) caused efficient lysis of S. aureus. Immunoelectron microscopy localized gp61 to the tail tip of the phi MR11 phage. These data strongly suggest that gp61 is a tail-associated lytic factor involved in local cell-wall degradation, allowing the subsequent injection of phi MR11 DNA into the host cytoplasm. Staphylococcus aureus lysogenized with phi MR11 was also lysed by both proteins. Staphylococcus aureus strains on which phi MR11 phage can only produce spots but not plaques were also lysed by each protein, indicating that gp61 may be involved in 'lysis from without'. This is the first report of the presence of a tail-associated virion protein that acts as a lysin, in an S. aureus phage.
- Published
- 2008
10. Species-specific PCR detection of the fish pathogen, Vibrio anguillarum, using the amiB gene, which encodes N-acetylmuramoyl-l-alanine amidase
- Author
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In-Soo Kong, Gyeong-Eun Hong, Sun-Hee Ahn, Dong-Gyun Kim, Sungchul C. Bai, and Ju-Yoon Bae
- Subjects
Vibrio anguillarum ,biology ,animal diseases ,Flounder ,biology.organism_classification ,Microbiology ,Molecular biology ,Vibrio ,Amidase ,chemistry.chemical_compound ,chemistry ,Genetics ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology ,Gene ,Pathogen ,DNA - Abstract
Vibrio anguillarum is the causative agent of the fish disease vibriosis and is the most intensely studied species of Vibrio. In the present study, specific primers and a PCR assay were designed to detect V. anguillarum. The primers were designed to amplify a 429-bp internal region of the V. anguillarum amiB gene, which encodes the peptidoglycan hydrolase N-acetylmuramoyl-L-alanine amidase. PCR specificity was demonstrated by successful amplification of DNA from V. anguillarum and by the absence of a PCR product from 25 other Vibrio strains and various enteric bacteria. The PCR produced a 429-bp amplified fragment from as little as 1 pg of V. anguillarum DNA. The limit of detection for this PCR technique was c. 20 bacterial colonies in 25 mg of infected flounder tissue. These results suggest that this PCR system is a sensitive and species-specific detection method, and is possible to use as a diagnostic tool to detect V. anguillarum.
- Published
- 2007
11. Activity of the major staphylococcal autolysin Atl
- Author
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Raja Biswas, Günther Thumm, Friedrich Götz, Petra Hentschel, Uwe K. Simon, and Lalitha Voggu
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Staphylococcus aureus ,Green Fluorescent Proteins ,Mutant ,Peptidoglycan ,Biology ,Microbiology ,Bacterial Adhesion ,Amidase ,Cell wall ,chemistry.chemical_compound ,Staphylococcus epidermidis ,Genetics ,Amidase activity ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology ,Recombination, Genetic ,Teichoic acid ,Virulence ,Hydrolysis ,Genetic Complementation Test ,Autolysin ,N-Acetylmuramoyl-L-alanine Amidase ,Molecular biology ,Recombinant Proteins ,chemistry ,Biochemistry ,Genes, Bacterial ,Mutagenesis ,Gene Deletion - Abstract
The major autolysin of Staphylococcus aureus (AtlA) and of Staphylococcus epidermidis (AtlE) are well-studied enzymes. Here we created an atlA deletion mutant in S. aureus that formed large cell clusters and was biofilm-negative. In electron micrographs, the mutant cells were distinguished by rough outer cell surface. The mutant could be complemented using the atlE gene from S. epidermidis. To study the role of the repetitive sequences of atlE, we expressed in Escherichia coli the amidase domain encoded by the gene, carrying no repeat regions (amiE) or two repeat regions (amiE-R1,2), or the three repeat regions alone (R1,2,3) as N-terminal His-tag fusion proteins. Only slight differences in the cell wall lytic activity between AmiE and AmiE-R1,2 were observed. The repetitive sequences exhibit a good binding affinity to isolated peptidoglycan and might contribute to the targeting of the amidase to the substrate. AmiE and AmiE-R1,2 have a broad substrate specificity as shown by similar activities with peptidoglycan lacking wall teichoic acid, O-acetylation, or both. As the amidase activity of AtlA and AtlE has not been proved biochemically, we used purified AmiE-R1,2 to determine the exact peptidoglycan cleavage site. We provide the first evidence that the amidase indeed cleaves the amide bond between N-acetyl muramic acid and L-alanine.
- Published
- 2006
12. Localization of germination-specific spore-lytic enzymes in Clostridium perfringens S40 spores detected by immunoelectron microscopy
- Author
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Shio Makino, Satoshi Kozuka, Yoko Yasuda, Ryuichi Moriyama, Yinghua Chen, Kunio Tochikubo, and Shigeru Miyata
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Glycoside Hydrolases ,Clostridium perfringens ,Immunoelectron microscopy ,Biology ,medicine.disease_cause ,Microbiology ,Amidase ,Genetics ,medicine ,Microscopy, Immunoelectron ,Molecular Biology ,Muramidase ,Antibodies, Fungal ,chemistry.chemical_classification ,fungi ,N-Acetylmuramoyl-L-alanine Amidase ,Immunogold labelling ,Spores, Fungal ,Immunohistochemistry ,Spore ,Enzyme ,chemistry ,Biochemistry ,Germination - Abstract
The localization of germination-specific spore-lytic enzymes, an amidase and a muramidase, in Clostridium perfringens S40 spores was examined by immunoelectron microscopy with respective antisera raised against the enzymes and a colloidal gold-immunoglobulin G complex. For both antisera, immunogold particles were visualized on the outside of the cortex of dormant spores, and they were not detected in germinated spores and decoated spores.
- Published
- 2006
13. Distribution and composition of the lysis cassette ofLactococcus lactisphages and functional analysis of bacteriophage ul36 holin
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Martin J. Loessner, Nataša Vukov, Steve Labrie, and Sylvain Moineau
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Gene Expression Regulation, Viral ,Lysis ,Transcription, Genetic ,viruses ,Amino Acid Motifs ,Lysin ,Virulence ,Biology ,complex mixtures ,Microbiology ,Amidohydrolases ,Amidase ,Bacteriophage ,Viral Proteins ,Bacteriolysis ,Genetics ,Bacteriophages ,RNA, Messenger ,Molecular Biology ,Peptide sequence ,Lactococcus lactis ,Membrane Proteins ,biology.organism_classification ,Bacteriophage lambda ,Molecular biology ,Holin ,RNA, Viral ,bacteria ,Muramidase - Abstract
The bacteriophage lysis cassette, which comprises a lysin and a holin gene, was analyzed in 18 Lactococcus lactis phages. A muramidase motif was found in the lysins of c2-like phages, while an amidase motif was observed in the lysins of 936-like phages. Both amidase and muramidase types were detected among the P335 phages. The P335 lysins were separated into three groups based on amino acid sequence identity. A class I holin was recognized in 936-like and c2-like phages, whereas P335-like phages possess class II holins. The P335 holins were further divided into four groups based on sequence identity. Only the holins of 936-like phages contained putative dual-start motifs. The unusual lysis cassette of the highly virulent P335-like phage ul36 contains a unique holin (orf74B) upstream of a lysin which is present in several other P335-like phages. Using the lambdadelta Sthf system, we demonstrated that gpORF74B induces cell lysis at the same time as lambdadelta Sthf::S105, the effector of lambda lysis. Transcriptional analysis of ul36 lysis cassette showed that first transcripts are detected 35 min after infection of L. lactis cells. The lysis clock of phage ul36 appears to be controlled by the late expression of the holin and lysin genes.
- Published
- 2004
14. The autolytic activity of the recombinant amidase ofStaphylococcus saprophyticusis inhibited by its own recombinant GW repeats
- Author
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Sören Gatermann, Wolfgang Hell, Agnes Anders, and Sylvia Reichl
- Subjects
Alanine ,Staphylococcus saprophyticus ,biology ,Staphylococcus ,Autolysin ,biology.organism_classification ,medicine.disease_cause ,Microbiology ,Molecular biology ,Bacterial Adhesion ,Recombinant Proteins ,Amidohydrolases ,Amidase ,law.invention ,Biochemistry ,law ,Genetics ,medicine ,Amidase activity ,Recombinant DNA ,Glucosaminidase ,Autolysis ,Molecular Biology ,Escherichia coli ,Repetitive Sequences, Nucleic Acid - Abstract
The Aas (autolysin/adhesin of Staphylococcus saprophyticus ) is a multifunctional surface protein containing two enzymatic domains an N -acetyl-muramyl- L -alanine amidase, an endo-β- N -acetyl- D -glucosaminidase, and two different regions of repetitive sequences, an N-terminal and a C-terminal repetitive domain. The C-terminal repetitive domain is built up by the repeats R1, R2 and R3, which interconnect the putative active centers of the amidase and glucosaminidase. To investigate the influence of the C-terminal repeats and the N-terminal repeats on the amidase activity, the repetitive domains and fragments of them were cloned and expressed in Escherichia coli . The influence of the different fragments on the activity of the recombinant amidase of the Aas, consisting of the active center of the enzyme and repeat R1, was investigated in a turbidimetric microassay. The different fragments derived from the C-terminal repeats inhibited the amidase activity, while the N-terminal repeats did not influence the activity of the enzyme. The inhibiting activity increased with the number of GW repeats the recombinant fragment contained. Thus we conclude, that the C-terminal GW repeats and not the N-terminal repeats are necessary for the cell wall targeting and the autolytic function of the amidase.
- Published
- 2003
15. The staphylokinase gene is located in the structural gene encodingN-acetylmuramyl-L-alanine amidase in methicillin-resistantStaphylococcus aureus
- Author
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Tadao Hasegawa, Keiko Yokoyama, Takuya Odagiri, Michio Ohta, Toshinobu Horii, Naohisa Futamura, and Soumitra Barua
- Subjects
Staphylococcus aureus ,Molecular Sequence Data ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Microbiology ,Amidase ,chemistry.chemical_compound ,Genetics ,medicine ,Humans ,Cloning, Molecular ,Molecular Biology ,Gene ,Alanine ,Structural gene ,Nucleic acid sequence ,Metalloendopeptidases ,Staphylokinase ,N-Acetylmuramoyl-L-alanine Amidase ,Sequence Analysis, DNA ,Staphylococcal Infections ,Molecular biology ,chemistry ,Genes, Bacterial ,Methicillin Resistance ,DNA - Abstract
The nucleotide sequence of a 15 600-bp DNA fragment containing the staphylokinase gene ( sak NU3-1) of methicillin-resistant Staphylococcus aureus (MRSA) NU3-1 was determined. The sak gene was found within the ply gene encoding N -acetylmuramyl- L -alanine amidase and thus the ply gene should be inactivated. In the flanking region of the sak gene, the tandem repeat sequences (GAAGTGTT and GAATGGTT) were present as possible junction points between the sak and ply genes. No sequences characteristic of the presence of an IS-like element were found. Upstream from the ply gene, the kdpA , kdpB and kdpC homologues were present. Downstream from the ply gene, the tagA , tagH and tagG homologues were present. The sak gene was inserted into the same position of ply in 5/6 of sak + MRSA isolates with different genotypes. In all of these sak + isolates, Sak was detected in the culture supernatant.
- Published
- 2000
16. Germination-specific cortex-lytic enzymes fromClostridium perfringensS40 spores: time of synthesis, precursor structure and regulation of enzymatic activity
- Author
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Shigeru Miyata, Ryuichi Moriyama, Shio Makino, Kazuhiro Sugimoto, and Kenji Urakami
- Subjects
Lysis ,Clostridium perfringens ,medicine.medical_treatment ,Biology ,medicine.disease_cause ,Microbiology ,Mass Spectrometry ,Amidohydrolases ,Amidase ,Genetics ,medicine ,Molecular Biology ,Muramidase ,Spores, Bacterial ,chemistry.chemical_classification ,Enzyme Precursors ,Protease ,Gene Expression Regulation, Bacterial ,Spore ,Enzyme ,Biochemistry ,Lytic cycle ,chemistry ,Protein Processing, Post-Translational - Abstract
Germination-specific enzymes, an amidase and a muramidase, of Clostridium perfringens S40 were synthesized at the time of forespore formation during sporulation. The amidase had a unique precursor structure consisting of four domains: the N-terminal pre-sequence, the N-terminal pro-sequence, mature enzyme and the C-terminal pro-sequence. The N-terminal pre-sequence and the C-terminal pro-sequence were sequentially processed at the time of development of phase-bright spores, and the resulting inactive pro-enzyme was activated by cleavage of the N-terminal pro-sequence with a specific protease during germination. A possible mechanism for the regulation of activity of muramidase, which is produced as a mature form and does not need processing for activation, is presented.
- Published
- 1999
17. Utilisation of an electro-optical method to investigate the amidase activity of microbial cells
- Author
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Nataliya A Khorkina, Sergei Yu. Shchyogolev, Olga M Tsivilyova, Vladimir V. Ignatov, Victor D. Bunin, and Oleg V Ignatov
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biology ,Brevibacterium ,Metabolism ,biology.organism_classification ,Microbiology ,Enzyme assay ,Amidase ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Biochemistry ,Acrylamide ,Genetics ,Amidase activity ,biology.protein ,Biophysics ,sense organs ,Molecular Biology ,Acrylic acid - Abstract
The electro-optical (EO) properties of a microbial cell suspension of Brevibacterium sp. strain 13 PA were examined during acrylamide and acrylic acid metabolism and during culture of cells in a mineral medium without added carbon sources. The dependence of the suspension turbidity changes due to cellular orientation on the frequency of an orienting electric field (orientational spectra, OSs) over the range of 10–10000 kHz were used. Alterations in the OSs, depending on cellular amidase activity, were recorded during growth with acrylamide as the role source of carbon. However, no amidase activity was observed in cells growing with acrylic acid as the sole carbon source. Growth on the carbon-free mineral medium resulted in a reduction in amidase activity. It is apparent that the OS changes reflect the corresponding changes in cell polarisability, which may be associated with acrylamide hydrolysis. The data generated from these studies can be taken as a basis for the EO determination of the enzyme activity of microbial biocatalysts.
- Published
- 1998
18. Z-phenylacetaldoxime degradation by a novel aldoxime dehydratase fromBacillussp. strain OxB-1
- Author
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Yasuo Kato and Yasuhisa Asano
- Subjects
chemistry.chemical_classification ,Bacillaceae ,biology ,Strain (chemistry) ,Stereochemistry ,Chemistry ,biology.organism_classification ,Microbiology ,Nitrilase ,Bacillales ,Amidase ,Phenylacetate ,Enzyme ,Biochemistry ,Genetics ,Molecular Biology ,Bacteria - Abstract
Z-phenylacetaldoxime (Z-PAOx) degrading bacterium, identified as Bacillus sp. strain OxB-1, was isolated from soil after 2 months acclimation. The enzyme involved in the degradation of Z-PAOx was induced by the aldoxime and required FMN for its activity. The enzyme was partially purified from the cell-free extract of the strain and shown to catalyze the stoichiometric dehydration reaction of Z-PAOx to form phenylacetonitrile (PAN). Activities of nitrilase and amidase acting on PAN and phenylacetamide (PAAm), respectively, to form phenylacetate (PAA) were found in the strain grown on Z-PAOx. This is the first report of aldoxime dehydratase co-existing with nitrile degrading enzymes in bacteria.
- Published
- 1998
19. Cobalt-dependent transcription of the nitrile hydratase gene inRhodococcus rhodochrousM8
- Author
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Nicola I. Sunzov, Tatyana E. Pogorelova, A. S. Yanenko, and Ludmila Ryabchenko
- Subjects
inorganic chemicals ,chemistry.chemical_classification ,Nitrile ,biology ,chemistry.chemical_element ,Rhodococcus rhodochrous ,Nitrile hydratase activity ,biology.organism_classification ,Microbiology ,Amidase ,chemistry.chemical_compound ,Enzyme ,chemistry ,Biochemistry ,Nitrile hydratase ,Genetics ,Molecular Biology ,Cobalt ,Rhodococcus - Abstract
The effects of cobalt ions on the activities of Rhodococcus rhodochrous M8 enzymes for nitrile utilization, nitrile hydratase and amidase, were investigated. In contrast to amidase, synthesis of nitrile hydratase and its activity required cobalt ions in the growth medium. Northern blot analysis showed that in the presence of cobalt ions, the level of mRNA for nitrile hydratase genes was several times higher than that under cobalt-limited conditions. It was assumed that the low nitrile hydratase activity in cells grown in the absence of cobalt ions is connected either with the weak expression of nitrile hydratase genes or with the rapid degradation of nitrile hydratase mRNA.
- Published
- 1996
20. Triton X-100 alters the resistance level of methicillin-resistantStaphylococcus aureusto oxacillin
- Author
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Hidekazu Suginaka, J. Suzuki, C. Shirai, Hitoshi Komatsuzawa, Keiichi Hiramatsu, and Motoyuki Sugai
- Subjects
Staphylococcus aureus ,Hot Temperature ,Micrococcaceae ,Octoxynol ,Penicillin Resistance ,Population ,Penicillins ,medicine.disease_cause ,Microbiology ,Amidase ,chemistry.chemical_compound ,Acetylglucosaminidase ,Genetics ,medicine ,education ,Molecular Biology ,Oxacillin ,education.field_of_study ,biology ,Lysostaphin ,N-Acetylmuramoyl-L-alanine Amidase ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Methicillin-resistant Staphylococcus aureus ,Anti-Bacterial Agents ,chemistry ,Triton X-100 ,Methicillin Resistance ,Peptides ,Bacteria - Abstract
We used population analysis to examine the effects of Triton X-100 on the level of resistance to oxacillin of 18 methicillin-resistant Staphylococcus aureus. In the presence of 0.02% Triton X-100, 17 formerly methicillin-resistiant strains exhibited enhanced sensitivity to oxacillin. One homogeneous isolate, KSAF1 was barely affected by the Triton X-100. Sensitivities of lysostaphin, 51 kDa N-acetylglucosaminidase and 62 kDa N-acetylmuramoyl-l-alanine amidase to heat-inactivated cells were not affected when the bacteria were grown in 0.02% Triton X-100. Our data, together with those of a previous study, suggested that Triton X-100 alters the resistance level of methicillin-resistant S. aureus by influencing a factor(s) other than PBPs, bacteriolytic enzymes, or femAB products.
- Published
- 1995
21. Analysis of the minor autolysins ofBacillus subtilisduring vegetative growth by zymography
- Author
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Junichi Sekiguchi, Naoko Sato, and Muhammad Harunur Rashid
- Subjects
Bacillaceae ,biology ,Cell growth ,Autolysin ,Biological activity ,Bacillus subtilis ,biology.organism_classification ,Microbiology ,Bacillales ,Molecular biology ,Amidase ,Biochemistry ,Genetics ,Zymography ,Molecular Biology - Abstract
SDS-PAGE and zymographic analysis of protein extracts from Bacillus subtilis AN8, which is deficient in the major 50-kDa amidase (CwlB[LytC]), revealed another distinct but relatively weak 50-kDa protein and its strong activity band. As well as the 50-kDa protein (designated as CwIE), a 35-kDa protein (designated as CwlF) and its activity were also found. In contrast to CwlE production, CwlF production was unaffected by a flaDl(sinR) point mutation which represses other vegetative phase autolysins. These newly identified autolysin activities quickly disappeared when cell growth entered stationary phase. The introduction of a sigD-null mutation caused the disappearance of Cw1E activity but Cw1F activity was unaffected by the mutation, as judged on zymography. The possible roles of CwlE and CwlF during vegetative growth are discussed.
- Published
- 1995
22. Bacillus subtilismutant deficient in the major autolytic amidase and glucosaminidase is impaired in motility
- Author
-
Akio Kuroda, Junichi Sekiguchi, and Muhammad Harunur Rashid
- Subjects
DNA, Bacterial ,Molecular Sequence Data ,Mutant ,Bacillus subtilis ,Molecular cloning ,Biology ,medicine.disease_cause ,Microbiology ,Amidase ,chemistry.chemical_compound ,Cell Movement ,Acetylglucosaminidase ,Genetics ,medicine ,Amino Acid Sequence ,Glucosaminidase ,Molecular Biology ,Escherichia coli ,Peptide sequence ,Base Sequence ,biology.organism_classification ,Molecular biology ,Hexosaminidases ,Biochemistry ,chemistry ,Mutation ,Cyanogen bromide ,Oligonucleotide Probes - Abstract
The purified autolytic endo-beta-N-acetylglucosaminidase of Bacillus subtilis AC327 was cleaved with cyanogen bromide, and the N-terminal amino acid sequence of one of the peptide fragments was determined. Then, a DNA fragment containing a part of the glucosaminidase gene was cloned into Escherichia coli JM109 using synthetic oligonucleotides as probes whose sequences had been deduced from the N-terminal amino acid sequence. Zymographic analysis showed that the resultant glucosaminidase-deficient strain lacked a 35-kDa lytic band in addition to a 90-kDa lytic one corresponding to the glucosaminidase. A double mutant strain deficient in the major two autolysins (amidase and glucosaminidase) exhibited greatly impaired motility on a swarm plate whereas the single mutant strains were motile.
- Published
- 1993
23. Structural analysis and biological significance of the cell wall lytic enzymes of Streptococcus pneumoniae and its bacteriophage
- Author
-
Concepción Ronda, JoséL. García, Pedro García, Rubens López, and Ernesto García
- Subjects
chemistry.chemical_classification ,Streptococcus Phages ,Sequence Homology, Amino Acid ,biology ,Cell division ,Molecular Sequence Data ,Autolysin ,N-Acetylmuramoyl-L-alanine Amidase ,biology.organism_classification ,Microbiology ,Amidase ,Bacteriophage ,Phenotype ,Streptococcus pneumoniae ,Enzyme ,chemistry ,Biochemistry ,Lytic cycle ,Cell Wall ,Genes, Bacterial ,Genetics ,Amino Acid Sequence ,Gene ,Peptide sequence ,Molecular Biology - Abstract
The development of an appropriate technique for the identification of autolysin-defective mutants of pneumococcus has been a fundamental step to carry out studies on the molecular characteristics of the lytic enzymes of Streptococcus pneumoniae and its bacteriophage. Our results show that the principal pneumococcal autolysin (an amidase) is responsible for the separation of the daughter cells at the end of the cell division. On the other hand, this system provides a reliable experimental model to support the extended idea concerning the modular organization of most proteins. The comparative analyses of the deduced amino acid sequences of these enzymes, as well as the construction of functional chimeric phage-bacterial enzymes, demonstrate that the C-terminal domain, which contains a large number of repeated amino acid motifs, is the substrate-binding domain, whereas the N-terminal domain provides enzymatic specificity. We propose that the pneumococcal lytic enzymes have evolved by modular exchange providing examples of the types of novel genes that the bacteria or the phage might create to allow them to become adapted to new environmental situations.
- Published
- 1992
24. LysK CHAP endopeptidase domain is required for lysis of live staphylococcal cells
- Author
-
David M. Donovan, Stephen C. Becker, Juli Foster-Frey, Shengli Dong, John Baker, and David G. Pritchard
- Subjects
Staphylococcus aureus ,Microbial Viability ,Lysostaphin ,CHAP domain ,Lysin ,Microbial Sensitivity Tests ,Biology ,Microbiology ,Molecular biology ,Endopeptidase ,Amidase ,Anti-Bacterial Agents ,Viral Proteins ,Bacteriolysis ,Biochemistry ,Bone plate ,Endopeptidases ,Genetics ,Amidase activity ,Staphylococcus Phages ,Molecular Biology ,Binding domain ,Sequence Deletion - Abstract
LysK is a staphylococcal bacteriophage endolysin composed of three domains: an N-terminal cysteine, histidine-dependent amidohydrolases/peptidases (CHAP) endopeptidase domain, a midprotein amidase 2 domain, and a C-terminal SH3b_5 (SH3b) cell wall-binding domain. Both catalytic domains are active on purified peptidoglycan by positive-ion electrospray ionization MS. The cut sites are identical to LytA (phi11 endolysin), with cleavage between d-alanine of the stem peptide and glycine of the cross-bridge peptide, and N-acetylmuramoyl-l-alanine amidase activity. Truncations of the LysK containing just the CHAP domain lyse Staphylococcus aureus cells in zymogram analysis, plate lysis, and turbidity reduction assays but have no detectable activity in a minimal inhibitory concentration (MIC) assay. In contrast, truncations harboring just the amidase lytic domain show faint activity in both the zymogram and turbidity reduction assays, but no detectable activity in either plate lysis or MIC assays. A fusion of the CHAP domain to the SH3b domain has near full-length LysK lytic activity, suggesting the need for a C-terminal binding domain. Both LysK and the CHAP-SH3b fusion were shown to lyse untreated S. aureus and the coagulase-negative strains. In the checkerboard assay, the CHAP-SH3b fusion achieves the same level of antimicrobial synergy with lysostaphin as the full-length LysK.
- Published
- 2009
25. Purification and characterization of a cell wall hydrolase encoded by the cw1A gene ofBacillus subtilis
- Author
-
Junichi Sekiguchi, Masafumi Imazeki, and Akio Kuroda
- Subjects
Molecular mass ,Bacillus subtilis ,Biology ,medicine.disease_cause ,biology.organism_classification ,Microbiology ,Amidase ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Hydrolase ,Genetics ,medicine ,Zymography ,Peptidoglycan ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology ,Escherichia coli - Abstract
A cell wall hydrolase of Bacillus subtilis was prepared from Escherichia coli cells harboring a plasmid containing the B. subtilis cw1A gene and purified by hydroxyapatite column chromatography and HPLC through TSK-gel G3000SWXL. In contrast to the molecular mass of 29 919 Da deduced from its nucleotide sequence, the purified CWLA is a 23 kDa protein. Characterization of the specific substrate bond cleaved by CWLA indicated the enzyme is an N-acetylmuramyl-l-alanine amidase. A 32-kDa precursor protein was detected on zymography of a crude cell homogenate. Some of the enzymatic properties of CWLA are also described.
- Published
- 1991
26. Characterization of AtlL, a bifunctional autolysin of Staphylococcus lugdunensis with N-acetylglucosaminidase and N-acetylmuramoyl-l-alanine amidase activities
- Author
-
Pascal Courtin, Raja Biswas, Ingrid Bourgeois, Jean-Louis Pons, Friedrich Götz, Laure Gibert, Martine Pestel-Caron, Emilie Camiade, Marie-Pierre Chapot-Chartier, Université de Rouen Normandie (UNIROUEN), Normandie Université (NU), Groupe de Recherche sur les Antimicrobiens et les Micro-Organismes (GRAM 1.0), Normandie Université (NU)-Normandie Université (NU), Microbial Genetics, Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen, Biochimie bactérienne (BIOBAC), and Institut National de la Recherche Agronomique (INRA)
- Subjects
Signal peptide ,autolysin ,peptidoglycan hydrolase ,Staphylococcus ,Bacillus subtilis ,Peptidoglycan ,Staphylococcus lugdunensis ,Microbiology ,Polymerase Chain Reaction ,Amidase ,03 medical and health sciences ,chemistry.chemical_compound ,Bacteriolysis ,Bacterial Proteins ,Acetylglucosaminidase ,Genetics ,Escherichia coli ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,biology ,030306 microbiology ,Autolysin ,Nucleic acid sequence ,N-Acetylmuramoyl-L-alanine Amidase ,biology.organism_classification ,Molecular biology ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,Biochemistry ,chemistry ,N-acetylglucosaminidase - Abstract
International audience; The nucleotide sequence of atlL, a gene encoding a putative Staphylococcus lugdunensis peptidoglycan hydrolase, was determined using degenerate consensus PCR and genome walking. This 3837-bp gene encodes a protein, AtlL, that appears as a putative bifunctional autolysin with a 29-amino acid putative signal peptide and two enzymatic putative centres (N-acetylmuramoyl-l-alanine amidase and N-acetylglucosaminidase) interconnected with three imperfect repeated sequences displaying glycine-tryptophan motifs. In order to determine whether both lytic domains were functional, and verify their exact enzymatic activities, gene fragments harbouring both putative domains, AM (N-acetylmuramoyl-l-alanine amidase enzymatic centre plus two repeated sequences) and GL (N-acetylglucosaminidase enzymatic centre plus one repeated sequence), were isolated, subcloned, and expressed in Escherichia coli. Purified recombinant AM and GL protein truncations exhibited cell wall lytic activity in zymograms performed with cell walls of Micrococcus lysodeikticus, Bacillus subtilis, and S. lugdunensis. AtlL is expressed during the whole growth, with an overexpression in the early-exponential stage. Liquid chromatography-mass spectrometry analysis of muropeptides generated by digestion of B. subtilis cell walls demonstrated the hydrolytic bond specificities and confirmed both of the acetyl domains' activities as predicted by sequence homology data. AtlL is the first autolysin described in S. lugdunensis, with a bifunctional enzymatic activity involved in peptidoglycan hydrolysis.
- Published
- 2008
27. Autolysins are direct involved in the bactericidal effect caused by penicillin in wild type and in tolerant pneumococci
- Author
-
Rubens López, Ernesto García, and Concepción Ronda
- Subjects
Penicillin Resistance ,Penicillins ,medicine.disease_cause ,Microbiology ,Amidase ,Bacteriolysis ,Acetylglucosaminidase ,Streptococcus pneumoniae ,Genetics ,medicine ,Molecular Biology ,Alleles ,biology ,Autolysin ,Wild type ,N-Acetylmuramoyl-L-alanine Amidase ,medicine.disease ,Streptococcaceae ,biology.organism_classification ,Penicillin ,Pneumococcal infections ,Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase ,Lytic cycle ,Biochemistry ,Mutation ,medicine.drug - Abstract
The two pneumococcal autolytic enzymes (an N-acetylmuramoyl-L-alanine amidase and an endo-beta-1,4-N-acetylglucosaminidase) are directly involved in the penicillin-induced killing of Streptococcus pneumoniae. The activity of these lytic enzymes was efficiently controlled in tolerant mutants under physiological conditions.
- Published
- 1990
28. Cloning, sequence analysis and expression of the gene encoding a novel wide-spectrum amidase belonging to the amidase signature superfamily from Achromobacter xylosoxidans
- Author
-
Weihong Jiang, Songcheng Zhu, Xuejuan Wang, and Gang Cai
- Subjects
musculoskeletal diseases ,Transposable element ,Sequence analysis ,Molecular Sequence Data ,Context (language use) ,Biology ,medicine.disease_cause ,Microbiology ,Amidase ,Amidohydrolases ,Substrate Specificity ,Genetics ,medicine ,Escherichia coli ,Genomic library ,Cloning, Molecular ,skin and connective tissue diseases ,Molecular Biology ,Base Composition ,Achromobacter denitrificans ,Achromobacter xylosoxidans ,Sequence Analysis, DNA ,biology.organism_classification ,Amides ,stomatognathic diseases ,Biochemistry - Abstract
Amidases are very important enzymes for industrial biocatalysis. We scored a novel amidase by screening the Achromobacter xylosoxidans gene library with cephalosporin analogous amides. The gene coding for the enzyme, designated ana, was cloned, sequenced and overexpressed in Escherichia coli. Sequence analysis of ana showed it to be an amidase signature family member. Interestingly, we noted that almost all Ana homologous amidases are from human pathogens responsible for chronic lung infections. Knowing the genetic context of Ana and its homologous amidases, we suggest that they could be a part of transposon structure. Ana can efficiently hydrolyze a series of cephalosporin analogous amides, including amides with an aninine, p-nitro-aninine, and beta-naphthylamine moiety, while cephalosporin could not serve as its substrate.
- Published
- 2005
29. The two-component lysis system of Staphylococcus aureus bacteriophage Twort: a large TTG-start holin and an associated amidase endolysin
- Author
-
Susanne Gaeng, Martin J. Loessner, Günther Wendlinger, Simon K. Maier, and Siegfried Scherer
- Subjects
Staphylococcus aureus ,CHAP domain ,Molecular Sequence Data ,Lysin ,Microbiology ,Amidase ,Bacteriophage ,chemistry.chemical_compound ,Viral Proteins ,Genetics ,Amino Acid Sequence ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology ,biology ,Sequence Homology, Amino Acid ,Membrane Proteins ,N-Acetylmuramoyl-L-alanine Amidase ,biology.organism_classification ,Molecular biology ,Transmembrane domain ,chemistry ,Biochemistry ,Holin ,Peptidoglycan ,Staphylococcus Phages ,Sequence Alignment - Abstract
The lysis genes of the virulent Staphylococcus aureus bacteriophage Twort were cloned and their nucleotide sequences determined. The endolysin gene plyTW encodes a 53.3-kDa protein, whose catalytic site is located in the amino-terminal domain. An enzymatically active fragment (N-terminal 271 amino acids) was overexpressed in Escherichia coli and partially purified. The enzyme rapidly cleaves staphylococcal peptidoglycan, and was shown to act as N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28). Significant sequence homology to the specific cell wall targeting domain of lysostaphin was observed in a 101-amino acid C-terminal overlap. However, we found that the large C-terminal portion (63%, 295 aa) of PlyTW is not required for staphylolytic activity. Located upstream of and overlapping plyTW by 35 bp in a different reading frame (+1), we identified holTW, which starts with a single TTG triplet. The gene specifies a 185-amino acid (20.5 kDa) holin protein, which features two potential hydrophobic, antiparallel transmembrane domains, and a highly charged, acidic C-terminus. HolTW is the largest class II holin described to date. It can substitute for the defective allele in phase lambda S' amber mutants, both in trans from an expression plasmid, and from within gt11::holTW. The proposed function is the formation of unspecific membrane lesions to promote access of the endolysin to the bacterial peptidoglycan.
- Published
- 1998
30. Utilization of acetonitrile and other aliphatic nitriles by a Candida famata strain
- Author
-
Carlos A. Rosa, João Carlos Teixeira Dias, and Valter R. Linardi
- Subjects
Acetonitriles ,Nitrile ,Microbiology ,Mining ,Amidase ,chemistry.chemical_compound ,chemistry ,Nitrile hydratase ,Ammonia ,Nitriles ,Genetics ,Butyronitrile ,Organic chemistry ,Propionitrile ,Gold ,Acrylonitrile ,Acetonitrile ,Water Microbiology ,Molecular Biology ,Acetamide ,Candida - Abstract
A variant of a yeast strain identified as Candida famata isolated from gold mine effluent was able to grow on acetonitrile, acrylonitrile, butyronitrile, isobutyronitrile, methacrylnitrile, propionitrile, succinonitrile, valeronitrile, acetamide, isobutyamide, and succinamide as sole nitrogen source, after acclimatization. The yeast grew on acetonitrile and acetamide at concentrations up to 4%. The utilisation of acetonitrile and acetamide by the C. famata strain probably involves hydrolysis in a two-step reaction mediated by both inducible and intracellular nitrile hydratase and amidase.
- Published
- 1996
31. Cloning of the wide spectrum amidase gene from Brevibacterium sp. R312 by genetic complementation. Overexpression in Brevibacterium sp. and Escherichia coli
- Author
-
Pierre Galzy, Frederic Bigey, Alain Arnaud, and S. Azza
- Subjects
Brevibacteriaceae ,Structural gene ,Mutant ,Brevibacterium ,Biology ,biology.organism_classification ,Microbiology ,Molecular biology ,Gene Expression Regulation, Enzymologic ,Amidase ,Amidohydrolases ,Complementation ,Subcloning ,Plasmid ,Genes, Bacterial ,Genetics ,Escherichia coli ,cardiovascular diseases ,Cloning, Molecular ,Molecular Biology - Abstract
The amiE gene of Brevibacterium sp. R312 encoding wide spectrum amidase was isolated by complementation of a Brevibacterium sp. mutant using a plasmid gene bank of chromosomal DNA. The amiE structural gene and its promoter were localized on a 1.8-kb fragment by subsequent subcloning and complementation studies. Another promoter localized in the pSR 1 fragment of the cloning vector was shown to be able to control amiE gene expression. In Brevibacterium sp., the investigation of amidase activities related to one copy of the gene suggested that the regulation of the amiE gene expression was under negative control. High expression levels have been obtained in Brevibacterium sp. and, after substitution of the amiE promoter by the tac promoter, in Escherichia coli.
- Published
- 1994
32. A new peptidoglycan hydrolase inStreptococcus pneumoniae
- Author
-
Rubens López, Ernesto García, José Luis García, Concepción Ronda, J.M. Sańchez-Puelles, and Enrique Méndez
- Subjects
Mutant ,Autolysin ,Biology ,medicine.disease_cause ,Microbiology ,Amidase ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Streptococcus pneumoniae ,Hydrolase ,Genetics ,medicine ,Glycoside hydrolase ,Peptidoglycan ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology - Abstract
The use of a mutant of Streptococcus pneumoniae deleted in the lytA gene coding for the N-acetyl-muramyl-l-alanine amidase, and therefore devoid of any amidase, has allowed the identification of a new murein hydrolase activity in this bacterium. This enzyme (or enzymes) acted as an autolysin when the cultures were grown at 30°C. Our results strongly suggest that the new lytic activity corresponds to one or more glycosidases.
- Published
- 1986
33. Preparation of antiserum against the pneumococcal autolysinâinhibition of autolysin activity and some autolytic processes by the antibody
- Author
-
Concepción Ronda, Rubens López, Ernesto García, Pedro García, J.M. Rojo, and Alexander Tomasz
- Subjects
Antiserum ,Lysis ,biology ,Autolysin activity ,Protein subunit ,Autolysin ,biochemical phenomena, metabolism, and nutrition ,Microbiology ,Amidase ,carbohydrates (lipids) ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Immunology ,Genetics ,biology.protein ,bacteria ,Antibody ,Molecular Biology ,DNA - Abstract
The importance of the pneumococcal murein hydrolase in a variety of physiologically important phenomena such as penicillin-induced or bacteriophage-induced lysis or uptake of DNA molecules during genetic transformation, has been documented in the literature [1,2]. The present brief communication reports the preparation of an antiserum against the subunit E-form of the purified pneumococcal autolysin, an N-acetylmuramyl-Lalanine amidase [3]. This antiserum was shown to inhibit specifically several autolytic processes, further confirming the postulated role of the pneumococcal murein hydrolase in these processes.
- Published
- 1982
34. The cellular location of nitrilase and amidase enzymes ofBrevibacteriumR312
- Author
-
Jacqueline M. Miller and Christopher J. Knowles
- Subjects
chemistry.chemical_classification ,biology ,Chemistry ,Brevibacterium ,biology.organism_classification ,Microbiology ,Nitrilase ,Amidase ,Ammonia ,chemistry.chemical_compound ,Enzyme ,Biochemistry ,Genetics ,Acetonitrile ,Molecular Biology ,Acetamide ,Bacteria - Abstract
Growth of Brevibacterium R312 on acetonitrile results in the appearance of acetate and ammonia in the medium, whereas incubation of harvested bacteria with acetonitrile results in appearance of acetamide, acetate and ammonia in the medium. Acetonitrilase and acetamidase activities were found to be located in the cytosolic fraction of the cell, suggesting that acetonitrile and acetamide readily enter and leave the bacterium. This was confirmed by the inability of these compounds to osmotically stabilise protoplasts, whereas acetate does so. The small size and neutral non-ionic structure of acetonitrile and acetamide suggest they probably permeate by simple diffusion.
- Published
- 1984
35. A mutant of Pseudomonas aeruginosa PAC with an altered amidase inducible by the novel substrate
- Author
-
Patricia H. Clarke and Christopher Turberville
- Subjects
Biochemistry ,Chemistry ,Pseudomonas aeruginosa ,Mutant ,Genetics ,medicine ,Substrate (chemistry) ,medicine.disease_cause ,Molecular Biology ,Microbiology ,Amidase - Published
- 1981
36. Identification of a lytic enzyme ofClostridium acetobutylicumthat degrades choline-containing pneumococcal cell walls
- Author
-
Rubens López, J.M. Sańchez-Puelles, José Luis García, and Ernesto García
- Subjects
Teichoic acid ,Clostridium acetobutylicum ,fungi ,Biology ,biology.organism_classification ,Microbiology ,Amidase ,Cell wall ,chemistry.chemical_compound ,Clostridium ,chemistry ,Biochemistry ,Genetics ,Choline ,Peptidoglycan ,N-acetylmuramoyl-L-alanine amidase ,Molecular Biology - Abstract
A protein that degrades pneumococcal walls containing choline, but not ethanolamine, in the teichoic acids has been isolated and purified from supernatants obtained from cultures of Clostridium acetobutylicum. The analyses of the degradation products of [3H]choline-labeled cell walls treated with this enzyme indicated that the purified protein, showing an apparent Mr of 115 000, is an N-acetylmuramyl-l-alanine amidase. Our results also suggest that C. acetobutylicum contains choline in its cell wall.
- Published
- 1988
37. Influence of cationic peptides on the activity of the autolytic endo-beta-N-acetylglucosaminidase of Staphylococcus simulans 22
- Author
-
Hans-Georg Sahl and Gabriele Bierbaum
- Subjects
Autolysis (biology) ,Stereochemistry ,Staphylococcus ,Peptide ,Microbiology ,Amidase ,Cell wall ,chemistry.chemical_compound ,Bacteriocins ,Cell Wall ,Staphylococcus simulans ,Cations ,Acetylglucosaminidase ,Genetics ,Molecular Biology ,Nisin ,chemistry.chemical_classification ,biology ,Autolysin ,biology.organism_classification ,Anti-Bacterial Agents ,Kinetics ,Hexosaminidases ,Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase ,chemistry ,Biochemistry ,bacteria ,Peptidoglycan ,Micrococcus luteus ,Autolysis ,Peptides - Abstract
The peptidoglycan hydrolyzing endo-beta-N-acetylglucosaminidase of Staphylococcus simulans 22 is not able to attack intact cell walls of S. simulans 22, but hydrolyzes cell walls of Micrococcus luteus and soluble peptidoglycan chains of S. simulans 22. Hydrolysis of cell walls of M. luteus is activated in presence of organic cations such as poly-L-lysine (n = 17) and the peptide antibiotics Pep 5 and nisin, whereas hydrolysis of soluble peptidoglycan chains is not influenced. High concentrations of inorganic cations inhibit enzyme activity. These effects are discussed with respect to the cationic nature of the enzyme (pI greater than 9.5) and the regulation of the concerted action of the N-acetylmuramoyl-L-alanine amidase and the glucosaminidase during S. simulans 22 autolysis in vivo.
- Published
- 1989
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