1. Properties of the C-terminal domain of 4.1 proteins.
- Author
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Scott C, Phillips GW, and Baines AJ
- Subjects
- Amino Acid Sequence, Animals, Caenorhabditis elegans genetics, Chromatography, High Pressure Liquid, Chymotrypsin, Cytoskeletal Proteins genetics, Cytoskeletal Proteins metabolism, Databases, Factual, Drosophila melanogaster genetics, Erythrocytes chemistry, Exons, Humans, Invertebrates, Mammals, Mass Spectrometry, Membrane Proteins genetics, Mice, Molecular Sequence Data, Peptide Fragments chemistry, Sequence Alignment, Sequence Analysis, Protein, Sequence Homology, Amino Acid, Software, Cytoskeletal Proteins chemistry, Membrane Proteins chemistry, Membrane Proteins metabolism, Neuropeptides
- Abstract
At the C-terminus of all known 4.1 proteins is a sequence domain unique to these proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate (Caenorhabditis elegans and Drosophila melanogaster) 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24-kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R) [Leto, T.L. & Marchesi, V.T. (1984) J. Biol. Chem. 259, 4603-4608]. Here we show that in 4.1R the 22/24-kDa fragment is not stable but rapidly processed to a 15-kDa fragment by chymotrypsin. The 15-kDa fragment is extremely stable, being resistant to overnight digestion in chymotrypsin on ice. Analysis of this fragment indicates that it is derived from residues 709-858 (SwissProt accession no. P48193), and represents the CTD of 4.1R. The fragment behaves as a globular monomer in solution. Secondary-structure predictions indicate that this domain is composed of five or six beta strands with an alpha helix before the most C-terminal of these. Together these data indicate that the CTD probably represents an independent folding structure which has gained function since the divergence of vertebrates from invertebrates.
- Published
- 2001
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