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Hypoxia is a key limiting factor for seedling emergence and establishment of direct-seeded rice (DSR) under submergence. The anaerobic germination (AG) tolerance, therefore, is one of the most critical traits in DSR breeding programs. However, the genetic basis of AG is still unclear. In this study, 229 single segment substitution lines (SSSLs) were arranged in an augmented design in field planting. We evaluated the anaerobic germinability by measuring the SSSLs' coleoptile length (CL) under submergence, and then identified AG QTLs. AG was a typical quantitative trait based on the results of five cropping seasons. We repeatedly detected 19 SSSLs with putative AG QTLs in at least two cropping seasons. Moreover, substitution mapping identified 11 integrated AG QTLs on nine chromosomes, including six positive and five negative QTLs with additive effect contributions ranging from 6.8 to 18.5%. Among the 11 QTLs, qAG4 and qAG11 were novel ones, qAG9 was cloned in a previous study, and the remaining eight QTLs overlapped with reported AG QTLs. Overall, we identified some genetic loci controlling AG in multiple environments, which may be useful for developing varieties suitable for DSR. [ABSTRACT FROM AUTHOR]

Selection of winter wheat cultivars with long coleoptiles is an important component of improving emergence, weed suppression and grain yield in low rainfall regions of the world. Seven winter wheat cultivars were hybridized in a Griffing’s half-diallel mating design, method 2 (reciprocals excluded, parents included), model 1 (fixed), and the progeny analyzed for coleoptile length in the F1 through F4 for response to selection, general combining ability (GCA), specific combining ability (SCA) and heritability. Highly significant differences existed for GCA among progeny in each generation. SCA was highly significant in the F1, F2 and F4, although SCA estimates were inconsistent among generations in each progeny population. The SCA/GCA ratio was 0.15, 0.11, 0.06 and 0.04 in the F1 through the F4, respectively, indicating that additive effects increased with homozygosity. Broad-sense heritability for coleoptile length was estimated at 0.86, 0.76, 0.60 and 0.78 for the F1 through the F4, respectively. Realized heritabilities ranged from −0.16 to 0.85 with a mean of 0.32 in the F3 and ranged from −0.68 to 0.68 with a mean of 0.13 in the F4. Spearman’s rank correlation coefficients (RS) were significant for all generation comparisons except the F1:F2, indicating that changes in rank for coleoptile length were insignificant. Cultivars with long coleoptiles and high GCA were the best parents for improving coleoptile length. Sustained selection over generations for coleoptile length was more effective than one generation of selection for genotypes both with and without reduced height genes. [ABSTRACT FROM AUTHOR]