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Understanding how human-induced management interacts with and affects the structure and functioning of large estuarine ecosystems is a major research challenge. In West Africa, human intervention on the Senegal River Estuary was intended to reduce the impact of major flooding by opening a new mouth in October 2003, 25 km to the north of the existing mouth. This study describes the effects of the new environmental conditions on the physical and biochemical characteristics of the water column and on microbial communities (bacteria, phytoplankton by size class and heterotrophic nanoflagellates (HNF)) in comparison with the situation in 2002. In 2006, seventeen stations were sampled, during both neap and spring tides, at a depth of 0.5 m along a salinity gradient from freshwater to marine conditions. Inorganic nutrient levels were often low but there were high levels of chlorophyll a in the estuarine area (mean of 13.7–20.7 μg L−1 in spring and neap tide conditions, respectively) producing a eutrophic status in this estuary. Average HNF abundances were lower (mean of 108 and 174 cells l−1 during neap and spring tides, respectively) compared to the situation in 2002 (mean between 2.5 and 6.7 × 104 cells l−1). Three biological indicators for assessing environmental changes are discussed: ratio of bacteria to heterotrophic flagellate abundances, ratio of picophytoplankton to nanophytoplankton, and the density of thermo-tolerant coliforms (TTC) and faecal streptococci. It is demonstrated that man-made alteration of the hydrologic regime can modify the microbial community structure and cause the health status of the estuary to deteriorate.

The trophic relationships between metazooplankton and natural particles were studied in May 2002 in the Senegal River Estuary (16 degrees N, 16 degrees W) in low water conditions (dry season). Environmental factors, micro-organism and metazooplankton were analyzed through sampling at a fixed station. Gut fluorescence measurements of and field experiments on zooplankton metabolism were also performed. Chlorophyll a concentrations ranged from 6.5 to 10.2 mu g 1(-1). The phytoplankton was dominated by picoplanktonic cells (83-94% of total numbers). The particulate organic carbon (1.2-2.7 mg l(-1)) originated for a large amount from organic detritus (20-70%). The zooplankton biomass was dominated by Cirripedia larvae and calanoid copepods (Acartia clausi, Temora stylifera and Paracalanus spp.). These taxa showed diel vertical migrations and maximal gut fluorescence at night, independently of tidal effects. Metabolic budgets show that their daily ingestion rates on phytoplankton (27-55% of body carbon weight) were insufficient to balance their respiration needs (40-51% of body carbon) and suggest that a selective feeding upon micro-heterotrophs (Heterotrophic NanoFlagellates, HNF) and/or detritus would be necessary to complete their energetic needs. The daily grazing pressure of metazooplankton represented only 5% of the in situ chlorophyll a and 14% of the primary production, but this pressure was mainly orientated towards nanophytoplankton. The daily recycling of nutrients by the metazooplankton excretion was rather high (83 and 46% of the in situ NH4-N and PO4-P concentrations, respectively). Therefore, the impact of metazooplankton on phytoplankton through top-down (grazing) and bottom-up (nutrient recycling) processes seemed substantial in this tropical estuary. (c) 2005 Elsevier Ltd. All rights reserved.

The abundances of culturable heterotrophic bacterial populations on the scale of a coastal ecosystem (Thau basin, France) were measured by systematic sampling at 63 stations in all four seasons. Distribution maps produced by the 'kriging' method indicate that bacterial distribution patterns correspond to gradients that decrease from points of continental water input and extend for 2 to 10 km. Variograms were used to analyse variance of abundances with distance and to classify distribution patterns according to local and large-scale variance. The mean abundances of bacteria in the waters of the ecosystem appeared to depend on fluctuations of watershed inputs. The heterogeneity of abundances was affected by fluctuations in wind speed and the related changes in convective and advective currents. Estimations of local and larger-scale variance can also be useful in determining the most suitable sampling strategies for describing and analysing the distribution of bacteria in aquatic ecosystems.