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The objectives of this study were to use both parametric and probabilistic approaches to analyze water column concentrations of both salinity (24,845 measurements) and boron (13,028 measurements) from numerous investigations conducted in the San Joaquin River watershed from 1985 to 2002 to assess spatial and temporal trends and determine the probability of exceeding regulatory targets during both the irrigation and non-irrigation season. Salinity and boron concentrations from 26 mainstem and tributary sites were highly correlated based on this 17 yr data set. Generally, salinity and boron concentrations were higher in winter/spring and lower in summer/fall; higher concentrations of both constituents were reported in tributary sites when compared with the mainstem San Joaquin River. Approximately half the sites showed showed a negative correlation between flow and both constituents. Concentrations of both salinity and boron were somewhat variable with flow conditions for the other sites. Both linear and curvilinear trends were inconsistent over time. The salinity 90th centiles for the 26 sites ranged from 143 to 7,559 micros cm(-1) with the highest 90th centiles in tributary sites. Probabilistic analysis of salinity 90th centiles by year for five sites with extensive data showed a significant decrease over time at two sites and no significant trend for the other three sites. The probability of exceeding the salinity targets during either the irrigation (700 microm cm(-1)) or non-irrigation (1,000 micros cm(-1)) season was greater than 19% for all but three sites. The boron 90th centiles for the 26 sites ranged from 0.41 to 13.6 mg L(-1) with the highest 90th centiles from tributary sites. Probabilistic analysis of the boron 90th centile values by year for the five sites with the most extensive data showed a significant decrease over time at two sites and no significant trend for the other three sites. The probability of exceeding the boron target during the irrigation season (0.80 mg L(-1)) and non-irrigation (1.0 mg L(-1)) season was greater that 18% for all but three sites. Results from this analysis have important regulatory implications as targets for both salinity and boron are frequently exceeded at various sites in the San Joaquin River watershed.

Provisional physical habitat indices were developed and validated for Maryland Coastal and Non-Coastal Plain streams using variables (commonly called metrics) that best discriminated reference and degraded conditions based on biological, chemical and land use data from the 1994-97 Maryland Biological Stream Survey (MBSS). These habitat indices contained variables that described structural, hydrological, vegetative and aesthetic components of stream habitat. Variables with the best discriminatory power for Coastal Plain streams were: instream habitat, velocity/depth diversity, pool/glide/eddy quality, embeddedness, maximum depth and aesthetic rating. Physical habitat variables with the best discriminatory power for Non-Coastal Plain sites were: instream habitat, velocity/depth diversity, riffle/run quality, embeddedness, number of rootwads and aesthetic rating. The overall classification efficiency for index validation was 76% for both indices pooled over both strata. Scaled physical habitat index values (0-100) for both strata identified nearly twice as many good sites (31%) as very poor sites (16%). More than half the Maryland sites were in the poor to fair range (53%).