6 results on '"16S ribosomal RNA gene"'
Search Results
2. Helicobacter cinaedi Infection of Abdominal Aortic Aneurysm, Japan
- Author
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Risako Kakuta, Hisakazu Yano, Hajime Kanamori, Takuya Shimizu, Yoshiaki Gu, Masumitsu Hatta, Tetsuji Aoyagi, Shiro Endo, Shinya Inomata, Chihiro Oe, Koichi Tokuda, Daiki Ozawa, Hitoshi Goto, Yukio Katori, and Mitsuo Kaku
- Subjects
Infected abdominal aortic aneurysm ,IAAA ,Helicobacter cinaedi ,bacteria ,16S ribosomal RNA gene ,antibiotic ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Published
- 2014
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3. Fatal Streptococcus equi subsp. ruminatorum Infection in a Man
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Hélène Marchandin, Estelle Jumas-Bilak, Abderrahmane Boumzebra, Delphine Vidal, Olivier Jonquet, and Philippe Corne
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Streptococcus equi subspecies ruminatorum ,HIV ,16S ribosomal RNA gene ,zoonosis ,meningitis ,bacteremia ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Published
- 2007
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4. Rat-Bite Fever in Human with Streptobacillus notomytis Infection, Japan
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Hideo Hasegawa, Hisakazu Yano, Shigeru Santo, Keiichi Mikasa, Kei Kasahara, Sachie Hirose, Sang-Tae Lee, Atsushi Yoshida, Yoshihiko Ogawa, Takamitsu Ito, and Ryuichi Nakano
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0301 basic medicine ,Microbiology (medical) ,Rat-Bite Fever in Human with Streptobacillus notomytis Infection, Japan ,Epidemiology ,Rat-bite fever ,030106 microbiology ,lcsh:Medicine ,Streptobacillus moniliformis ,Streptobacillus notomytis ,Microbiology ,lcsh:Infectious and parasitic diseases ,03 medical and health sciences ,0302 clinical medicine ,Japan ,medicine ,Research Letter ,lcsh:RC109-216 ,030212 general & internal medicine ,bacteria ,biology ,business.industry ,lcsh:R ,medicine.disease ,biology.organism_classification ,16S ribosomal RNA gene ,rat-bite fever ,zoonoses ,Infectious Diseases ,streptococci ,business - Abstract
We report a case of rat-bite fever in a 94-year-old woman with Streptobacillus notomytis infection. We established an epidemiologic link between exposure to rats and human infection by performing nested PCRs that detected S. notomytis in the intraoral swab specimens obtained from rats captured in the patient’s house.
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- 2018
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5. Isolation of Schineria sp. from a Man
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Laurent Roudiere, Hélène Jean-Pierre, Christine Comte, Isabelle Zorgniotti, Hélène Marchandin, and Estelle Jumas-Bilak
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Myiasis ,Schineria sp. ,bacteremia ,maggot ,16S ribosomal RNA gene ,letter ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Published
- 2007
- Full Text
- View/download PDF
6. Helicobacter cinaedi Infection of Abdominal Aortic Aneurysm, Japan
- Author
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Koichi Tokuda, Shiro Endo, Hitoshi Goto, Yoshiaki Gu, Risako Kakuta, Hisakazu Yano, Yukio Katori, Shinya Inomata, Takuya Shimizu, Daiki Ozawa, Mitsuo Kaku, Chihiro Oe, Hajime Kanamori, Tetsuji Aoyagi, and Masumitsu Hatta
- Subjects
Microbiology (medical) ,Letter ,Epidemiology ,medicine.drug_class ,Antibiotics ,lcsh:Medicine ,Microbiology ,law.invention ,lcsh:Infectious and parasitic diseases ,Chocolate agar ,chemistry.chemical_compound ,Helicobacter cinaedi ,Japan ,23S ribosomal RNA ,law ,antibiotic ,medicine ,Blood culture ,lcsh:RC109-216 ,Helicobacter ,Letters to the Editor ,bacteria ,medicine.diagnostic_test ,biology ,lcsh:R ,biology.organism_classification ,medicine.disease ,16S ribosomal RNA gene ,antibacterial ,immunocompromised ,Infectious Diseases ,Gram staining ,chemistry ,Bacteremia ,IAAA ,antimicrobial ,Infected abdominal aortic aneurysm ,Helicobacter cinaedi Infection of Abdominal Aortic Aneurysm, Japan - Abstract
To the Editor: Infected abdominal aortic aneurysm (IAAA) is uncommon, but life-threatening; the mortality rate ranges from 25% to30% (1,2). Identification of the pathogen is essential for diagnosis and treatment. Previous studies have shown that species of the genera Salmonella, Staphylococcus, and Streptococcus are the most common pathogens associated with IAAA, but a causative organism is not identified in 14%–40% of patients (1,2). Helicobacter cinaedi has mainly been isolated from immunocompromised patients with bacteremia, cellulitis, and septic arthritis (3,4). Here, we report 3 cases of IAAA caused by H. cinaedi detected by 16S ribosomal RNA (16S rRNA) gene analysis. The 3 patients (case-patients 1–3) were referred to Tohoku University Hospital, Sendai, Japan, for surgical treatment of IAAA in 2013. None had a history of disease known to cause immunodeficiency. Because their abdominal aneurysms enlarged rapidly, all 3 patients underwent resection of the aneurysm and extensive local debridement and irrigation. Histopathologic examination of the surgical specimens revealed severe atherosclerosis and inflammation, consistent with a diagnosis of IAAA. For each case-patient, blood culture (BacT/ALERT; bioMerieux Industry, Tokyo, Japan) was negative, as was culture of surgically removed tissue on HK semisolid agar (Kyokuto Pharmaceutical Industrial Co., Ltd., Tokyo, Japan) at 35°C under aerobic conditions for 7 days for enrichment of microorganisms, and on chocolate agar at 35°C under 5% CO2 for 48 h. We then used 16S rRNA gene analysis to identify a pathogen. We extracted DNA from resected tissues using a QIAamp DNA Mini kit (QIAGEN K.K., Tokyo, Japan), amplified it using PCR, and sequenced it using universal primers for 16S rRNA (5). We used the EzTaxon-e Database for sequence analysis (http://eztaxon-e.ezbiocloud.net/), which revealed that the 16S rRNA gene sequence of bacteria in the aneurysmal tissues was identical to that of H. cinaedi. For case-patient 3, we cultured microaerophilic tissue at 35°C using Trypticase Soy Agar II with 5% sheep blood (Kyokuto Pharmaceutical Industrial Co.) and an Anaero Pouch-MicroAero (Mitsubishi Gas Chemical Co., Inc., Tokyo, Japan) to detect H. cinaedi. We observed bacterial colonies, after Gram staining, which showed gram-negative spiral rods. By 16S rRNA gene analysis, we confirmed that the isolate was H. cinaedi. For each of the 3 case-patients, species identification was further confirmed by sequence analysis of 23S ribosomal RNA (23S rRNA) (DNA Data Bank of Japan: http://blast.ddbj.nig.ac.jp/blastn?lang = ja) and amplification of the gyrB gene region that is specific to H. cinaedi (6,7). In samples from the 3 patients, there were mutations of the 23S rRNA gene and amino acid substitutions in GyrA related to macrolide and fluoroquinolone resistance, respectively (6,8). After identifying the pathogen, we selected antimicrobial agents based on the reported drug susceptibility profile of H. cinaedi (6,8). The patients survived and are being followed up as outpatients. Clinical and molecular characteristics of the 3 cases of IAAA with H. cinaedi infection are shown in the Table. Table Clinical characteristics of 3 patients with Helicobacter cinaedi–infected abdominal aortic aneurysms and molecular characteristics of isolates, Japan * Although the high negative culture rate for pathogens causing IAAA had been explained by prolonged preoperative antimicrobial drug therapy (2), another possibility is that H. cinaedi may be a causative organism. Earlier research has suggested that H. cinaedi infections can remain undiagnosed or be incorrectly diagnosed because of difficulty in isolating this microorganism (9). H. cinaedi grows slowly under microaerophilic conditions, but no current standard laboratory methods result in a diagnosis of this pathogen (6,7,9). We isolated H. cinaedi from surgically removed tissue from case-patient 3 by microaerophilic culture after taking this pathogen into consideration. For diagnosis of H. cinaedi infections, methods leading to accurate identification by clinical microbiological laboratories are needed. Currently, H. cinaedi is identified by molecular analysis of the 16S rRNA gene (6,7,10). In addition, matrix-assisted laser desorption/ionization–time-of-flight mass spectrometry (MALDI-TOF MS) (10), may become a useful tool for this purpose. Standard breakpoints of antimicrobial drugs for H. cinaedi have not been defined, but all isolates in this study had mutations that indicated resistance to macrolides and fluoroquinolones. For adequate treatment for H. cinaedi infections, guidelines for selection of antimicrobial drugs and surveillance of its antimicrobial susceptibility profile are required. During November 2012–November 2013, 8 patients underwent their first operation for IAAA at the university hospital. We used 16S rRNA gene analysis of surgical tissues and culture of blood and tissue specimens to detect pathogens (data not shown). Identification of H. cinaedi in 3 of 8 patients suggests that it could be a prevalent pathogen related to IAAA. Taking such information into consideration could affect the prognosis of many patients. Accordingly, tissue should be cultured while considering H. cinaedi infection in patients with IAAA. H. cinaedi colonizes the gastrointestinal tract, and bacterial translocation may lead to bacteremia associated with mucosal damage (4). However, the route of transmission and reason most H. cinaedi infections have been reported in Japan are unclear. To clarify the relationship between H. cinaedi and IAAA, further clinical and epidemiologic studies are needed. Meanwhile, we recommend clinical consideration of H. cinaedi infection, use of appropriate laboratory procedures to identify cases, and development of treatment guidelines.
- Published
- 2014
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