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Species with different ecological niches will likely exhibit distinct responses to a changing environment. Differences in the magnitude of niche specialization may also indicate which species may be more vulnerable to environmental change, as many life-history characteristics are known to affect climate change vulnerability. We characterized the niche space of three sympatric high-elevation ground-dwelling squirrels, yellow-bellied marmot ( Marmota flaviventer ), Belding's ground squirrel ( Urocitellus beldingi ), and golden-mantled ground squirrel ( Callospermophilus lateralis ), in the alpine and upper subalpine regions of the Sierra Nevada in California. We used 5879 observations of individual squirrels, collected from 4 years (2009-2012) of transect survey data, to quantify which ecogeographical variable types (climate, topography, or landcover) were most important in defining the niche of each species. We conducted Ecological Niche Factor Analysis to quantify the niche and generate indices of "marginality" (magnitude of selection) and "specialization" (narrowness of niche space). All three species demonstrated differential use of niche space when compared to the available niche space. Moreover, the relative importance of the variables shaping the niche differed among these species. For example, the presence of meadows was important in defining the niche for U. beldingi and M. flaviventer , but the presence of conifers was important to C. lateralis . Precipitation was important in defining the niche for all three species, positively so for U. beldingi , and negatively for the other two species. The niche breadth of these three species was also positively associated with geographic range size. Mammals in high-elevation mountain systems often are perceived as vulnerable to climate shifts, but our results underscore the importance of also including non-climate-based factors in defining the niche. The overall magnitude of niche selection for all three species was driven by a combination of topographic, climatic, and landcover factors; thus, efforts to forecast areas where these species can persist in the future need to evaluate from more than just a climatic perspective., (© 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)