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Wood is one of the oldest building materials and, thanks to its favorable mechanical and technological properties, one of the most versatile. Due to its biological nature, wooden artefacts can undergo some alteration during their service life that can be caused by mechanical, environmental or biological agents. Waterlogged and buried wood elements, present in wetlands and aquatic environments, are subject to modifications at the chemical and anatomical level, which also affect physical and related mechanical properties of the material. The possibility to predict long-term performance and the rate of modification of mechanical/physical properties of the wood material in specific environmental conditions is crucial for proper design and optimal maintenance of submerged load-bearing timber structures. Therefore, prediction models to estimate selected material properties were developed within this study. For this purpose Fourier Transform near-infrared (FT-NIR) spectroscopy and multivariate analysis based on partial least-squares (PLS) were used. The models proved to be effective to predict selected dynamic and physical parameters of waterlogged samples. However, in order to include the effect of water saturation in the material on site further research is indispensable. The possible detrimental effect on wood mechanical properties of waterlogging in differing environmental conditions is also discussed in this paper. Dynamic tests were performed on samples of two species, Quercus robur L. and Pinus sylvestris L., after 8 years of deposition in two differing sites. Additionally, the results obtained from fresh and archaeological samples were compared. No significant effects have been observed due to the depositional environment after short-term waterlogging. A more remarkable difference in the rate of the modification of dynamic and physical (density) properties can be attributed to differing natural features of the tested wooden species. It may be concluded that, in order to ensure a longer service-life of waterlogged timber structures, original wooden material should be properly selected, with regard to species, growth conditions, and log characteristics. [ABSTRACT FROM AUTHOR]