35 results on '"*ROTAXANES"'
Search Results
2. Molecular folding governs switchable singlet oxygen photoproduction in porphyrin-decorated bistable rotaxanes
- Author
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Riebe, Jan, Bädorf, Benedikt, Löffelsender, Sarah, Gutierrez Suburu, Matias E., Rivas Aiello, María Belén, Strassert, Cristian A., Grimme, Stefan, and Niemeyer, Jochen
- Published
- 2024
- Full Text
- View/download PDF
3. Rotaxanes with a photoresponsive macrocycle modulate the lipid bilayers of large and giant unilamellar vesicles
- Author
-
Udyogi N. K. Conthagamage, Rajitha Rajeshwar T, Stijn van der Ham, Nasim Akhtar, Macallister L. Davis, Senuri G. Jayawardana, Lilia Lopez, Hanumantha Rao Vutukuri, Jeremy C. Smith, Micholas Dean Smith, and Víctor García-López
- Subjects
Chemistry ,QD1-999 - Abstract
Abstract Rotaxanes equipped with actuators hold great potential for developing highly functional molecular machines. Such systems could significantly enhance our ability to study and manipulate biological and artificial membranes. Here, we introduce a rotaxane with a ring featuring two azobenzene photoswitches, which retain their photoreversibility and can be stochastically shuttled along the axle in solution. Studies in model bilayers, supported by molecular dynamics simulations, show how azobenzene photoswitching alters the interaction of rotaxanes with surrounding lipids, leading to changes in lipid packing. Such changes in the lipid bilayer were leveraged to induce the light-triggered release of sulforhodamine B from large unilamellar vesicles. Additionally, light activation of the rotaxanes is shown to induce reversible contraction and expansion of giant unilamellar vesicles. The results provide novel insights into the interactions and operation of rotaxanes in lipid bilayers and their impact on membrane properties. This will aid in developing systems for precise membrane manipulation for applications in biomedicine and bioengineering.
- Published
- 2024
- Full Text
- View/download PDF
4. Molecular folding governs switchable singlet oxygen photoproduction in porphyrin-decorated bistable rotaxanes
- Author
-
Jan Riebe, Benedikt Bädorf, Sarah Löffelsender, Matias E. Gutierrez Suburu, María Belén Rivas Aiello, Cristian A. Strassert, Stefan Grimme, and Jochen Niemeyer
- Subjects
Chemistry ,QD1-999 - Abstract
Abstract Rotaxanes are mechanically interlocked molecules where a ring (macrocycle) is threaded onto a linear molecule (thread). The position of the macrocycle on different stations on the thread can be controlled in response to external stimuli, making rotaxanes applicable as molecular switches. Here we show that bistable rotaxanes based on the combination of a Zn(II) tetraphenylporphyrin photosensitizer, attached to the macrocycle, and a black-hole-quencher, attached to the thread, are capable of singlet oxygen production which can be switched on/off by the addition of base/acid. However, we found that only a sufficiently long linker between both stations on the thread enabled switchability, and that the direction of switching was inversed with regard to the original design. This unexpected behavior was attributed to intramolecular folding of the rotaxanes, as indicated by extensive theoretical calculations. This evidences the importance to take into account the conformational flexibility of large molecular structures when designing functional switchable systems.
- Published
- 2024
- Full Text
- View/download PDF
5. Asymmetric rotaxanes as dual-modality supramolecular imaging agents for targeting cancer biomarkers.
- Author
-
d'Orchymont, Faustine and Holland, Jason P.
- Subjects
- *
TUMOR markers , *ROTAXANES , *POSITRON emission tomography , *CHEMICAL stability , *FLUORESCEIN , *PROSTATE cancer , *COMPLEX ions , *OPTICAL images - Abstract
Dual-modality imaging agents featuring both a radioactive complex for positron emission tomography (PET) and a fluorophore for optical fluorescence imaging (OFI) are crucial tools for reinforcing clinical diagnosis and intraoperative surgeries. We report the synthesis and characterisation of bimodal mechanically interlocked rotaxane-based imaging agents, constructed via the cucurbit[6]uril CB[6]-mediated alkyne-azide 'click' reaction. Two synthetic routes involving four- or six-component reactions are developed to access asymmetric rotaxanes. Furthermore, by using this rapid and versatile approach, a peptide-based rotaxane targeted toward the clinical prostate cancer biomarker, prostate-specific membrane antigen (PSMA), and bearing a 68Ga-radiometal ion complex for positron emission tomography and fluorescein as an optically active imaging agent, was synthesised. The chemical and radiochemical stability, and the cellular uptake profile of the radiolabelled and fluorescent rotaxane was evaluated in vitro where the experimental data demonstrate the viability of using an asymmetric rotaxane platform to produce dual-modality imaging agents that specifically target prostate cancer cells. Mechanically interlocked supramolecular molecules show potential as imaging probes for biomedical applications. Here, the authors developed synthetic routes based on multicomponent reactions to access rotaxane-based bimodal imaging agents for nuclear and optical detection using the cucurbit[6]uril CB[6]-mediated azide-alkyne click reaction. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
6. Conjugated bis(enaminones) as effective templates for rotaxane assembly and their post-synthetic modifications.
- Author
-
Razi, Syed S., Marin-Luna, Marta, Alajarin, Mateo, Martinez-Cuezva, Alberto, and Berna, Jose
- Subjects
TRANSLATIONAL motion ,ROTAXANES synthesis ,SUPRAMOLECULAR chemistry ,CYCLOELIMINATION reactions ,RING formation (Chemistry) ,ROTAXANES - Abstract
The development of efficient methods for the synthesis of mechanically interlocked compounds is currently considered a major challenge in supramolecular chemistry. Twofold vinylogous fumaramides, a class of conjugated bis(enaminones), successfully achieve the assembly of hydrogen-bonded amide-based rotaxanes, with a templating ability comparable to that of their parent fumaramide-based systems, showcasing full conversions and impressive yields up to 92%. Computational calculations offer a compelling explanation for the remarkable efficiency of these bis(enaminones) in driving the synthesis of unprecedented rotaxanes. The reactivity of these interlocked species was thoroughly investigated, revealing that a one-step double stopper-exchange process can be successfully performed while preserving the mechanical bond. This approach facilitates the formation of controllable rotaxanes, including a three-station molecular shuttle, whose assembly via a clipping methodology is highly unselective. The internal translational motion of this latter species has been successfully controlled in a reversible way by means of a cycloaddition/retrocycloaddition sequence. Many templates for accessing hydrogen-bonded amide-based rotaxanes have resulted in modest yields, but a novel templating method has shown significant promise. Conjugated bis(enaminones) serve as an effective template for the formation of rotaxanes, and a post-synthetic double stopper-exchange method further enables the preparation of versatile and complex rotaxane structures. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
7. Asymmetric rotaxanes as dual-modality supramolecular imaging agents for targeting cancer biomarkers
- Author
-
Faustine d’Orchymont and Jason P. Holland
- Subjects
Chemistry ,QD1-999 - Abstract
Abstract Dual-modality imaging agents featuring both a radioactive complex for positron emission tomography (PET) and a fluorophore for optical fluorescence imaging (OFI) are crucial tools for reinforcing clinical diagnosis and intraoperative surgeries. We report the synthesis and characterisation of bimodal mechanically interlocked rotaxane-based imaging agents, constructed via the cucurbit[6]uril CB[6]-mediated alkyne-azide ‘click’ reaction. Two synthetic routes involving four- or six-component reactions are developed to access asymmetric rotaxanes. Furthermore, by using this rapid and versatile approach, a peptide-based rotaxane targeted toward the clinical prostate cancer biomarker, prostate-specific membrane antigen (PSMA), and bearing a 68Ga-radiometal ion complex for positron emission tomography and fluorescein as an optically active imaging agent, was synthesised. The chemical and radiochemical stability, and the cellular uptake profile of the radiolabelled and fluorescent rotaxane was evaluated in vitro where the experimental data demonstrate the viability of using an asymmetric rotaxane platform to produce dual-modality imaging agents that specifically target prostate cancer cells.
- Published
- 2023
- Full Text
- View/download PDF
8. Decorating polymer beads with 1014 inorganic-organic [2]rotaxanes as shown by spin counting
- Author
-
Asthana, Deepak, Thomas, Dean, Lockyer, Selena J., Brookfield, Adam, Timco, Grigore A., Vitorica-Yrezabal, Iñigo J., Whitehead, George F. S., McInnes, Eric J. L., Collison, David, Leigh, David A., and Winpenny, Richard E. P.
- Published
- 2022
- Full Text
- View/download PDF
9. Decorating polymer beads with 1014 inorganic-organic [2]rotaxanes as shown by spin counting.
- Author
-
Asthana, Deepak, Thomas, Dean, Lockyer, Selena J., Brookfield, Adam, Timco, Grigore A., Vitorica-Yrezabal, Iñigo J., Whitehead, George F. S., McInnes, Eric J. L., Collison, David, Leigh, David A., and Winpenny, Richard E. P.
- Subjects
- *
POLARIZATION (Nuclear physics) , *ROTAXANES , *MAGNETIC particles , *ELECTRON paramagnetic resonance spectroscopy , *POLYMERS , *CLICK chemistry - Abstract
Polymer beads have been used as the core of magnetic particles for around twenty years. Here we report studies to attach polymetallic complexes to polymer beads for the first time, producing beads of around 115 microns diameter that are attached to 1014 hybrid inorganic-organic [2]rotaxanes. The bead is then formally a [1014] rotaxane. The number of complexes attached is counted by EPR spectroscopy after including TEMPO radicals within the thread of the hybrid [2]rotaxanes. Polymer beads are used in the core of magnetic particles, and beads functionalised with paramagnetic molecules are promising as agents for dynamic nuclear polarization. Here, the authors use conventional click chemistry to decorate a polymer bead with 1014 [2]rotaxanes containing paramagnetic {Cr7Ni} rings. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
10. Decorating polymer beads with 1014 inorganic-organic [2]rotaxanes as shown by spin counting
- Author
-
Deepak Asthana, Dean Thomas, Selena J. Lockyer, Adam Brookfield, Grigore A. Timco, Iñigo J. Vitorica-Yrezabal, George F. S. Whitehead, Eric J. L. McInnes, David Collison, David A. Leigh, and Richard E. P. Winpenny
- Subjects
Chemistry ,QD1-999 - Abstract
Polymer beads are used in the core of magnetic particles, and beads functionalised with paramagnetic molecules are promising as agents for dynamic nuclear polarization. Here, the authors use conventional click chemistry to decorate a polymer bead with 1014 [2]rotaxanes containing paramagnetic {Cr7Ni} rings.
- Published
- 2022
- Full Text
- View/download PDF
11. Non-threaded and rotaxane-type threaded wheel–axle assemblies consisting of dinickel(II) metallomacrocycle and dibenzylammonium axle.
- Author
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Sakata, Yoko, Kobayashi, Seiya, Yamamoto, Misato, Doken, Katsuya, Kamezawa, Mayu, Yamaki, Sachiko, and Akine, Shigehisa
- Subjects
- *
COVALENT bonds , *ROTAXANES , *AXLES , *MOLECULES , *EQUILIBRIUM - Abstract
Rotaxanes are typically prepared using covalent bonds to trap a wheel component onto an axle molecule, and rotaxane-type wheel–axle assembly using only noncovalent interactions has been far less explored. Here we show that a dinickel(II) metallomacrocycle forms two different types of wheel–axle assemblies with a dibenzylammonium axle molecule based only on noncovalent interactions. The non-threaded assembly was obtained by introduction of Ni2+ into the macrocycle before the complexation with the axle molecule (metal-first method). The non-threaded assembly was in rapid equilibrium with each of the components in solution. The threaded assembly was obtained by introduction of Ni2+ after the formation of a pseudorotaxane from the non-metalated wheel and the axle molecule (axle-first method). The threaded assembly was not in equilibrium with the dissociated species even though it was maintained only by noncovalent interactions. Thus, formation of one of the non-threaded and threaded wheel–axle assemblies over the other is governed by the assembly pathway. Mechanically interlocked rotaxanes are typically prepared using covalent bonds to trap a wheel component onto an axle molecule, and rotaxane-type wheel–axle assembly using only noncovalent interactions has been far less explored. Here, a dinickel(II) metallomacrocycle is found to form two different types of wheel–axle assemblies, with a dibenzylammonium axle molecule forming both non-threaded and rotaxane-type threaded assemblies, based only on noncovalent interactions, with formation of one over the other governed by the assembly pathway. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
12. Molecular entanglement can strongly increase basicity.
- Author
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Capocasa, Giorgio, Frateloreto, Federico, Valentini, Matteo, and Di Stefano, Stefano
- Subjects
BASICITY ,PROTON affinity ,INORGANIC compounds ,CHEMICAL properties ,CATENANES ,ROTAXANES - Abstract
Brønsted basicity is a fundamental chemical property featured by several kinds of inorganic and organic compounds. In this Review, we treat a particularly high basicity resulting from the mechanical entanglement involving two or more molecular subunits in catenanes and rotaxanes. Such entanglement allows a number of basic sites to be in close proximity with each other, highly increasing the proton affinity in comparison with the corresponding, non-entangled counterparts up to obtain superbases, properly defined as mechanically interlocked superbases. In the following pages, the development of this kind of superbases will be described with a historical perusal, starting from the initial, serendipitous findings up to the most recent reports where the strong basic property of entangled molecular units is the object of a rational design. Brønsted basicity can be greatly enhanced by the mechanical entanglement of two or more interlocked molecular subunits within catenanes and rotaxanes. Here, the authors discuss the development of such mechanically interlocked superbases, and outline challenges and opportunities for future directions of research. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
13. Asymmetric rotaxanes as dual-modality supramolecular imaging agents for targeting cancer biomarkers
- Author
-
d’Orchymont, Faustine, primary and Holland, Jason P., additional
- Published
- 2023
- Full Text
- View/download PDF
14. Rotaxane rings promote oblique packing and extended lifetimes in DNA-templated molecular dye aggregates.
- Author
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Barclay, Matthew S., Roy, Simon K., Huff, Jonathan S., Mass, Olga A., Turner, Daniel B., Wilson, Christopher K., Kellis, Donald L., Terpetschnig, Ewald A., Lee, Jeunghoon, Davis, Paul H., Yurke, Bernard, Knowlton, William B., and Pensack, Ryan D.
- Subjects
- *
ROTAXANES , *EXCITON theory , *NUCLEOTIDE sequence , *ABSORPTION spectra , *DIMERS - Abstract
Molecular excitons play a central role in natural and artificial light harvesting, organic electronics, and nanoscale computing. The structure and dynamics of molecular excitons, critical to each application, are sensitively governed by molecular packing. Deoxyribonucleic acid (DNA) templating is a powerful approach that enables controlled aggregation via sub-nanometer positioning of molecular dyes. However, finer sub-Angstrom control of dye packing is needed to tailor excitonic properties for specific applications. Here, we show that adding rotaxane rings to squaraine dyes templated with DNA promotes an elusive oblique packing arrangement with highly desirable optical properties. Specifically, dimers of these squaraine:rotaxanes exhibit an absorption spectrum with near-equal intensity excitonically split absorption bands. Theoretical analysis indicates that the transitions are mostly electronic in nature and only have similar intensities over a narrow range of packing angles. Compared with squaraine dimers, squaraine:rotaxane dimers also exhibit extended excited-state lifetimes and less structural heterogeneity. The approach proposed here may be generally useful for optimizing excitonic materials for a variety of applications ranging from solar energy conversion to quantum information science. DNA templating is a useful strategy to control the positioning and aggregation of molecular dyes on a sub-nanometer scale, but sub-angstrom control is desirable for the precise tailoring of excitonic properties. Here, the authors show that templating squaraine dyes functionalized with rotaxane rings promotes an elusive oblique packing arrangement and extended excited-state lifetimes. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
15. One-pot synthesis of cyclodextrin-based radial poly[n]catenanes.
- Author
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Higashi, Taishi, Morita, Kentaro, Song, Xia, Zhu, Jingling, Tamura, Atsushi, Yui, Nobuhiko, Motoyama, Keiichi, Arima, Hidetoshi, and Li, Jun
- Subjects
- *
CYCLODEXTRINS , *ROTAXANES , *CATENANES , *DRUG carriers , *MOLECULAR machinery (Technology) - Abstract
Supermolecules such as rotaxanes and catenanes have recently attracted considerable attention due to their potential widespread applications in areas such as molecular machines and switches. Moreover, the development of polyrotaxanes and polycatenanes, comprising multiple cyclic compounds, has allowed the fabrication of structures with novel properties. Although rotaxanes and polyrotaxanes have been extensively prepared from cyclodextrins as building blocks, very few studies have considered the syntheses of cyclodextrin-based polycatenanes. Here we report the one-pot syntheses and isolation of cyclodextrin-based radial polycatenanes with large numbers of cyclic components (>10) attached to a poly(ethylene glycol)–poly(propylene glycol)–poly(ethylene glycol) copolymer core, with characterization performed using Raman spectroscopy, gel permeation chromatography, 1H-NMR spectroscopy, and other techniques. Overall, the results presented herein may be used to develop advanced supramolecular structures and materials, such as molecular machines, molecular actuators, molecular switches, biomaterials, and drug carriers. There are several structural motifs commonly reported for polycatenanes although radial polycatenanes remain poorly studied. Here, the authors report the facile synthesis of cyclodextrin based radial polycatenanes composed of more than ten rings via a polypseudorotaxane intermediate. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
16. Preprogrammed assembly of supramolecular polymer networks via the controlled disassembly of a metastable rotaxane.
- Author
-
Washino, Gosuke, Soto, Miguel A., Wolff, Siad, and MacLachlan, Mark J.
- Subjects
SUPRAMOLECULAR polymers ,POLYMER networks ,ACTIVE medium ,POLYMERS - Abstract
In our daily life, some of the most valuable commodities are preprogrammed or preassembled by a manufacturer; the end-user puts together the final product and gathers properties or function as desired. Here, we present a chemical approach to preassembled materials, namely supramolecular polymer networks (SPNs), which wait for an operator's command to organize autonomously. In this prototypical system, the controlled disassembly of a metastable interlocked molecule (rotaxane) liberates an active species to the medium. This species crosslinks a ring-containing polymer and assembles with a reporting macrocycle to produce colorful SPNs. We demonstrate that by using identical preprogrammed systems, one can access multiple supramolecular polymer networks with different degrees of fluidity (μ
* = 2.5 to 624 Pa s-1 ) and color, all as desired by the end-user. Preassembled materials are ubiquitous in our everyday life due to their readiness and functionality; an end-user simply follows instructions to assemble them and harness function. Here, metastable rotaxanes are utilized to approach preassembled materials: a multicomponent, preprogrammed system can be conveniently (via heating) transformed into colorful polymer networks at the end-user's will. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
17. Decorating polymer beads with 1014 inorganic-organic [2]rotaxanes as shown by spin counting
- Author
-
Deepak Asthana, Dean Thomas, Selena J. Lockyer, Adam Brookfield, Grigore A. Timco, Iñigo J. Vitorica-Yrezabal, George F. S. Whitehead, Eric J. L. McInnes, David Collison, David A. Leigh, and Richard E. P. Winpenny
- Subjects
Materials Chemistry ,Environmental Chemistry ,General Chemistry ,Biochemistry - Abstract
Polymer beads have been used as the core of magnetic particles for around twenty years. Here we report studies to attach polymetallic complexes to polymer beads for the first time, producing beads of around 115 microns diameter that are attached to 1014 hybrid inorganic-organic [2]rotaxanes. The bead is then formally a [1014] rotaxane. The number of complexes attached is counted by EPR spectroscopy after including TEMPO radicals within the thread of the hybrid [2]rotaxanes.
- Full Text
- View/download PDF
18. Switchable protection and exposure of a sensitive squaraine dye within a redox active rotaxane.
- Author
-
Wasternack, Janos, Schröder, Hendrik V., Witte, J. Felix, Ilisson, Mihkel, Hupatz, Henrik, Hille, Julian F., Gaedke, Marius, Valkonen, Arto M., Sobottka, Sebastian, Krappe, Alexander, Schubert, Mario, Paulus, Beate, Rissanen, Kari, Sarkar, Biprajit, Eigler, Siegfried, Resch-Genger, Ute, and Schalley, Christoph A.
- Subjects
RADICAL anions ,OXIDATION-reduction reaction ,RADICALS (Chemistry) ,OPTICAL properties ,CHROMOPHORES - Abstract
In nature, molecular environments in proteins can sterically protect and stabilize reactive species such as organic radicals through non-covalent interactions. Here, we report a near-infrared fluorescent rotaxane in which the stabilization of a chemically labile squaraine fluorophore by the coordination of a tetralactam macrocycle can be controlled chemically and electrochemically. The rotaxane can be switched between two co-conformations in which the wheel either stabilizes or exposes the fluorophore. Coordination by the wheel affects the squaraine's stability across four redox states and renders the radical anion significantly more stable—by a factor of 6.7—than without protection by a mechanically bonded wheel. Furthermore, the fluorescence properties can be tuned by the redox reactions in a stepwise manner. Mechanically interlocked molecules provide an excellent scaffold to stabilize and selectively expose reactive species in a co-conformational switching process controlled by external stimuli. Incorporating sensitive chromophores into interlocked systems that are mechanically responsive to external stimuli is attractive for tuning of the dye's optical properties and stability. Here, the authors report the mechanically controlled protection and deprotection of a squaraine dye within a [2]rotaxane, governed by macrocycle shielding/de-shielding upon chloride addition or oxidation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
19. Conjugated bis(enaminones) as effective templates for rotaxane assembly and their post-synthetic modifications
- Author
-
Syed S. Razi, Marta Marin-Luna, Mateo Alajarin, Alberto Martinez-Cuezva, and Jose Berna
- Subjects
Chemistry ,QD1-999 - Abstract
Abstract The development of efficient methods for the synthesis of mechanically interlocked compounds is currently considered a major challenge in supramolecular chemistry. Twofold vinylogous fumaramides, a class of conjugated bis(enaminones), successfully achieve the assembly of hydrogen-bonded amide-based rotaxanes, with a templating ability comparable to that of their parent fumaramide-based systems, showcasing full conversions and impressive yields up to 92%. Computational calculations offer a compelling explanation for the remarkable efficiency of these bis(enaminones) in driving the synthesis of unprecedented rotaxanes. The reactivity of these interlocked species was thoroughly investigated, revealing that a one-step double stopper-exchange process can be successfully performed while preserving the mechanical bond. This approach facilitates the formation of controllable rotaxanes, including a three-station molecular shuttle, whose assembly via a clipping methodology is highly unselective. The internal translational motion of this latter species has been successfully controlled in a reversible way by means of a cycloaddition/retrocycloaddition sequence.
- Published
- 2024
- Full Text
- View/download PDF
20. Pre-arranged building block approach for the orthogonal synthesis of an unfolded tetrameric organic–inorganic phosphazane macrocycle.
- Author
-
Sim, Ying, Leon, Felix, Hum, Gavin, Phang, Si Jia Isabel, Ong, How Chee, Ganguly, Rakesh, Díaz, Jesús, Clegg, Jack K., and García, Felipe
- Subjects
HOST-guest chemistry ,SUPRAMOLECULAR chemistry ,BLOCK designs ,MACROCYCLIC compounds - Abstract
Inorganic macrocycles remain challenging synthetic targets due to the limited number of strategies reported for their syntheses. Among these species, large fully inorganic cyclodiphosphazane macrocycles have been experimentally and theoretically highlighted as promising candidates for supramolecular chemistry. In contrast, their hybrid organic–inorganic counterparts are lagging behind due to the lack of synthetic routes capable of controlling the size and topological arrangement (i.e., folded vs unfolded) of the target macrocycle, rendering the synthesis of differently sized macrocycles a tedious screening process. Herein, we report—as a proof-of-concept—the combination of pre-arranged building blocks and a two-step synthetic route to rationally enable access a large unfolded tetrameric macrocycle, which is not accessible via conventional synthetic strategies. The obtained macrocycle hybrid cyclodiphosphazane macrocycle, cis-[μ-P(μ-N
t Bu)]2 (μ-p-OC6 H4 C(O)O)]4 [μ-P(μ-Nt Bu)]2 (4), displays an unfolded open-face cavity area of 110.1 Å2 . Preliminary theoretical host–guest studies with the dication [MeNC5 H4 ]2 2+ suggest compound 4 as a viable candidate for the synthesis of hybrid proto-rotaxanes species based on phosphazane building blocks. Hybrid organic–inorganic phosphazane macrocycles have been studied for their potentially useful host–guest chemistries, but synthetic routes capable of controlling their size have yet to be reported. Here, a two-step route that exploits pre-arranged building blocks enables the design of an unfolded tetrameric macrocycle. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
21. Non-threaded and rotaxane-type threaded wheel–axle assemblies consisting of dinickel(II) metallomacrocycle and dibenzylammonium axle
- Author
-
Yoko Sakata, Seiya Kobayashi, Misato Yamamoto, Katsuya Doken, Mayu Kamezawa, Sachiko Yamaki, and Shigehisa Akine
- Subjects
Chemistry ,QD1-999 - Abstract
Abstract Rotaxanes are typically prepared using covalent bonds to trap a wheel component onto an axle molecule, and rotaxane-type wheel–axle assembly using only noncovalent interactions has been far less explored. Here we show that a dinickel(II) metallomacrocycle forms two different types of wheel–axle assemblies with a dibenzylammonium axle molecule based only on noncovalent interactions. The non-threaded assembly was obtained by introduction of Ni2+ into the macrocycle before the complexation with the axle molecule (metal-first method). The non-threaded assembly was in rapid equilibrium with each of the components in solution. The threaded assembly was obtained by introduction of Ni2+ after the formation of a pseudorotaxane from the non-metalated wheel and the axle molecule (axle-first method). The threaded assembly was not in equilibrium with the dissociated species even though it was maintained only by noncovalent interactions. Thus, formation of one of the non-threaded and threaded wheel–axle assemblies over the other is governed by the assembly pathway.
- Published
- 2024
- Full Text
- View/download PDF
22. Molecular entanglement can strongly increase basicity
- Author
-
Giorgio Capocasa, Federico Frateloreto, Matteo Valentini, and Stefano Di Stefano
- Subjects
Chemistry ,QD1-999 - Abstract
Abstract Brønsted basicity is a fundamental chemical property featured by several kinds of inorganic and organic compounds. In this Review, we treat a particularly high basicity resulting from the mechanical entanglement involving two or more molecular subunits in catenanes and rotaxanes. Such entanglement allows a number of basic sites to be in close proximity with each other, highly increasing the proton affinity in comparison with the corresponding, non-entangled counterparts up to obtain superbases, properly defined as mechanically interlocked superbases. In the following pages, the development of this kind of superbases will be described with a historical perusal, starting from the initial, serendipitous findings up to the most recent reports where the strong basic property of entangled molecular units is the object of a rational design.
- Published
- 2024
- Full Text
- View/download PDF
23. Multi-step FRET systems based on discrete supramolecular assemblies.
- Author
-
Chen, Dengli, Xiao, Tangxin, Monflier, Éric, and Wang, Leyong
- Subjects
FLUORESCENCE resonance energy transfer ,DISCRETE systems ,ENERGY transfer ,OPTOELECTRONIC devices ,EXCITED states - Abstract
Fluorescence resonance energy transfer (FRET) from the excited state of the donor to the ground state of the acceptor is one of the most important fluorescence mechanisms and has wide applications in light-harvesting systems, light-mediated therapy, bioimaging, optoelectronic devices, and information security fields. The phenomenon of sequential energy transfer in natural photosynthetic systems provides great inspiration for scientists to make full use of light energy. In recent years, discrete supramolecular assemblies (DSAs) have been successively constructed to incorporate donor and multiple acceptors, and to achieve multi-step FRET between them. This perspective describes recent advances in the fabrication and application of DSAs with multi-step FRET. These DSAs are categorized based on the non-covalent scaffolds, such as amphiphilic nanoparticles, host-guest assemblies, metal-coordination scaffolds, and biomolecular scaffolds. This perspective will also outline opportunities and future challenges in this research area. Fluorescence resonance energy transfer (FRET) is one of the most important fluorescence mechanisms, with multi-step FRET systems enabling sequential energy transfer as seen in natural photosynthetic systems. Here, the authors review recent progress in exploiting discrete supramolecular assemblies to achieve multi-step FRET between donors and multiple acceptors. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
24. Functional dynamics in framework materials.
- Author
-
Krause, Simon and Milić, Jovana V.
- Subjects
PHASES of matter ,CONDENSED matter ,MOLECULAR switches ,SOLIDS - Abstract
Dynamic crystalline materials have emerged as a unique category of condensed phase matter that combines crystalline lattice with components that display dynamic behavior in the solid state. This has involved a range of materials incorporating dynamic functional units in the form of stimuli-responsive molecular switches and machines, among others. In particular, it has been possible by relying on framework materials, such as porous molecular frameworks and other hybrid organic-inorganic systems that demonstrated potential for serving as scaffolds for dynamic molecular functions. As functional dynamics increase the level of complexity, the associated phenomena are often overlooked and need to be explored. In this perspective, we discuss a selection of recent developments of dynamic solid-state materials across material classes, outlining opportunities and fundamental and methodological challenges for their advancement toward innovative functionality and applications. Constructing crystalline materials with specific stimuli-responsive dynamics and controlled molecular motion affords opportunities for innovative functionality and applications. Here, the authors discuss recent developments in dynamic solid-state framework materials across a range of material classes, exploring key phenomena associated with such complex dynamics. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
25. Preprogrammed assembly of supramolecular polymer networks via the controlled disassembly of a metastable rotaxane
- Author
-
Gosuke Washino, Miguel A. Soto, Siad Wolff, and Mark J. MacLachlan
- Subjects
Chemistry ,QD1-999 - Abstract
Preassembled materials are ubiquitous in our everyday life due to their readiness and functionality; an end-user simply follows instructions to assemble them and harness function. Here, metastable rotaxanes are utilized to approach preassembled materials: a multicomponent, preprogrammed system can be conveniently (via heating) transformed into colorful polymer networks at the end-user’s will.
- Published
- 2022
- Full Text
- View/download PDF
26. One-pot synthesis of cyclodextrin-based radial poly[n]catenanes
- Author
-
Xia Song, Kentaro Morita, Jun Li, Jingling Zhu, Atsushi Tamura, Hidetoshi Arima, Taishi Higashi, Nobuhiko Yui, and Keiichi Motoyama
- Subjects
chemistry.chemical_classification ,Molecular switch ,Materials science ,Cyclodextrin ,Catenane ,One-pot synthesis ,technology, industry, and agriculture ,Supramolecular chemistry ,General Chemistry ,Biochemistry ,Combinatorial chemistry ,Molecular machine ,lcsh:Chemistry ,chemistry.chemical_compound ,lcsh:QD1-999 ,chemistry ,Materials Chemistry ,Copolymer ,Environmental Chemistry ,Ethylene glycol - Abstract
Supermolecules such as rotaxanes and catenanes have recently attracted considerable attention due to their potential widespread applications in areas such as molecular machines and switches. Moreover, the development of polyrotaxanes and polycatenanes, comprising multiple cyclic compounds, has allowed the fabrication of structures with novel properties. Although rotaxanes and polyrotaxanes have been extensively prepared from cyclodextrins as building blocks, very few studies have considered the syntheses of cyclodextrin-based polycatenanes. Here we report the one-pot syntheses and isolation of cyclodextrin-based radial polycatenanes with large numbers of cyclic components (>10) attached to a poly(ethylene glycol)–poly(propylene glycol)–poly(ethylene glycol) copolymer core, with characterization performed using Raman spectroscopy, gel permeation chromatography, 1H-NMR spectroscopy, and other techniques. Overall, the results presented herein may be used to develop advanced supramolecular structures and materials, such as molecular machines, molecular actuators, molecular switches, biomaterials, and drug carriers. There are several structural motifs commonly reported for polycatenanes although radial polycatenanes remain poorly studied. Here, the authors report the facile synthesis of cyclodextrin based radial polycatenanes composed of more than ten rings via a polypseudorotaxane intermediate.
- Published
- 2019
27. Supramolecular construction of a cyclobutane ring system with four different substituents in the solid state.
- Author
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Sinnwell, Michael A., Groeneman, Ryan H., Ingenthron, Benjamin J., Li, Changan, and MacGillivray, Leonard R.
- Subjects
SUPRAMOLECULAR chemistry ,CYCLOBUTANE ,SOLID state chemistry ,CRYSTALLIZATION ,PHOTOCHEMISTRY - Abstract
Methods to form cyclobutane rings by an intermolecular [2 + 2] cross-photoreaction (CPR) with four different substituents are rare. These reactions are typically performed in the liquid phase, involve multiple steps, and generate product mixtures. Here, we report a CPR that generates a cyclobutane ring with four different aryl substituents. The CPR occurs quantitatively, without side products, and without a need for product purification. Generally, we demonstrate how face-to-face stacking interactions of aromatic rings can be exploited in the process of cocrystallization and the field of crystal engineering to stack and align unsymmetrical alkenes in CPRs to afford chiral cyclobutanes with up to four different aryl groups via binary cocrystals. Overall, we expect the process herein to be useful to generate chiral carbon scaffolds, which is important given the presence of four-membered carbocyclic rings as structural units in biological compounds and materials science. Preparation of cyclobutanes with four different substituents is rare and often arduous. Here a cocrystallisation strategy enables the intermolecular [2+2] cross-photoreaction of non-symmetrical stilbene derivatives to obtain chiral tetrasubstituted cyclobutanes with up to four different substituents in quantitative yield. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
28. Design, synthesis and applications of responsive macrocycles.
- Author
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Yu, Jingjing, Qi, Dawei, and Li, Jianwei
- Subjects
MACROCYCLIC compounds ,OXIDATION-reduction reaction ,HYDROGEN-ion concentration ,MOLECULES ,HOST-guest chemistry - Abstract
Inspired by the lock and key principle, the development of supramolecular macrocyclic chemistry has promoted the prosperous growth of host-guest chemistry. The updated induced-fit and conformation selection model spurred the emerging research on responsive macrocycles (RMs). This review introduces RMs, covering their design, synthesis and applications. It gives readers insight into the dynamic control of macrocyclic molecules and the exploration of materials with desired functions. Macrocycles have been widely studied for their structure-specific and highly selective recognition properties. Here the authors review the design, synthesis and applications of photo-, pH- and redox-responsive macrocycles. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
29. Open questions in functional molecular topology.
- Author
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Schaufelberger, Fredrik
- Subjects
TOPOLOGY ,COLLEGE teachers ,CHEMICALS ,NANOCHEMISTRY ,SCIENCE education - Abstract
Molecular knots are evolving from academic curiosities to a practically useful class of mechanically interlocked molecules, capable of performing unique tasks at the nanoscale. In this comment, the author discusses the properties of molecular knots, and highlights future challenges for chemical topology. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
30. Polarizability and isotope effects on dispersion interactions in water.
- Author
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Zhan, Yi-Yang, Jiang, Qi-Chun, Ishii, Kentaro, Koide, Takuya, Kobayashi, Osamu, Kojima, Tatsuo, Takahashi, Satoshi, Tachikawa, Masanori, Uchiyama, Susumu, and Hiraoka, Shuichi
- Subjects
POLARIZABILITY (Electricity) ,ISOTOPES ,CALORIMETRY ,ISOMERISM ,AMPHIPHILES - Abstract
True understanding of dispersion interaction in solution remains elusive because of difficulty in the precise evaluation of its interaction energy. Here, the effect of substituents with different polarizability on dispersion interactions in water is discussed based on the thermodynamic parameters determined by isothermal titration calorimetry for the formation of discrete aggregates from gear-shaped amphiphiles (GSAs). The substituents with higher polarizability enthalpically more stabilize the nanocube, which is due to stronger dispersion interactions and to the hydrophobic effect. The differences in the thermodynamic parameters for the nanocubes from the GSAs with CH
3 and CD3 groups are also discussed to lead to the conclusion that the H/D isotope effect on dispersion interactions is negligibly small, which is due to almost perfect entropy-enthalpy compensation between the two isotopomers. The thermodynamic parameters of molecules dispersed in water are influenced by the polarizability of their substituents. Here the formation of discrete aggregates from gear-shaped amphiphiles is determined by isothermal titration calorimetry, showing that substituents with higher polarizability stabilize the nanocubes enthalpically. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
31. Rotaxane rings promote oblique packing and extended lifetimes in DNA-templated molecular dye aggregates
- Author
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Christopher K. Wilson, Bernard Yurke, Olga A. Mass, Ryan D. Pensack, Jonathan S. Huff, Paul H. Davis, Matthew S. Barclay, Ewald A. Terpetschnig, Simon K. Roy, William B. Knowlton, Daniel B. Turner, Donald L. Kellis, and Jeunghoon Lee
- Subjects
Organic electronics ,Rotaxane ,Materials science ,Absorption spectroscopy ,Exciton ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Biochemistry ,Article ,0104 chemical sciences ,Chemistry ,chemistry.chemical_compound ,chemistry ,Chemical physics ,Materials Chemistry ,Environmental Chemistry ,0210 nano-technology ,Quantum information science ,Absorption (electromagnetic radiation) ,QD1-999 ,Nanoscopic scale ,DNA - Abstract
Molecular excitons play a central role in natural and artificial light harvesting, organic electronics, and nanoscale computing. The structure and dynamics of molecular excitons, critical to each application, are sensitively governed by molecular packing. Deoxyribonucleic acid (DNA) templating is a powerful approach that enables controlled aggregation via sub-nanometer positioning of molecular dyes. However, finer sub-Angstrom control of dye packing is needed to tailor excitonic properties for specific applications. Here, we show that adding rotaxane rings to squaraine dyes templated with DNA promotes an elusive oblique packing arrangement with highly desirable optical properties. Specifically, dimers of these squaraine:rotaxanes exhibit an absorption spectrum with near-equal intensity excitonically split absorption bands. Theoretical analysis indicates that the transitions are mostly electronic in nature and only have similar intensities over a narrow range of packing angles. Compared with squaraine dimers, squaraine:rotaxane dimers also exhibit extended excited-state lifetimes and less structural heterogeneity. The approach proposed here may be generally useful for optimizing excitonic materials for a variety of applications ranging from solar energy conversion to quantum information science. DNA templating is a useful strategy to control the positioning and aggregation of molecular dyes on a sub-nanometer scale, but sub-angstrom control is desirable for the precise tailoring of excitonic properties. Here, the authors show that templating squaraine dyes functionalized with rotaxane rings promotes an elusive oblique packing arrangement and extended excited-state lifetimes.
- Published
- 2021
32. Bifurcation of self-assembly pathways to sheet or cage controlled by kinetic template effect.
- Author
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Foianesi-Takeshige, Leonardo Hayato, Takahashi, Satoshi, Tateishi, Tomoki, Sekine, Ryosuke, Okazawa, Atsushi, Zhu, Wenchao, Kojima, Tatsuo, Harano, Koji, Nakamura, Eiichi, Sato, Hirofumi, and Hiraoka, Shuichi
- Subjects
BIFURCATION theory ,MOLECULAR self-assembly ,THERMODYNAMICS ,LIGANDS (Chemistry) ,CHEMICAL reactions ,PALLADIUM - Abstract
The template effect is a key feature to control the arrangement of building blocks in assemblies, but its kinetic nature remains elusive compared to the thermodynamic aspects, with the exception of very simple reactions. Here we report a kinetic template effect in a self-assembled cage composed of flexible ditopic ligands and Pd(II) ions. Without template anion, a micrometer-sized sheet is kinetically trapped (off-pathway), which is converted into the thermodynamically most stable cage by the template anion. When the template anion is present from the start, the cage is selectively produced by the preferential cyclization of a dinuclear intermediate (on-pathway). Quantitative and numerical analyses of the self-assembly of the cage on the on-pathway revealed that the accelerating effect of the template is stronger for the early stage reactions of the self-assembly than for the final cage formation step itself, indicating the kinetic template effect. Thermodynamic template effects are widely used in supramolecular assembly, but kinetic template effects are less well understood. Here the contributions of thermodynamic and kinetic template effects in the self-assembly of palladium metallocages are disentangled using QASAP methodology. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
33. A polyrotaxanated covalent organic network based on viologen and cucurbit[7]uril.
- Author
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Das, Gobinda, Sharma, Sudhir Kumar, Prakasam, Thirumurugan, Gándara, Felipe, Mathew, Renny, Alkhatib, Nour, Saleh, Na'il, Pasricha, Renu, Olsen, John-Carl, Baias, Maria, Kirmizialtin, Serdal, Jagannathan, Ramesh, and Trabolsi, Ali
- Subjects
VIOLOGENS ,CUCURBITACEAE ,MACROCYCLIC compounds ,POLYMERIZATION ,COVALENT bonds - Abstract
Since their initial presentation in 2005 by Yaghi and co-workers, covalent organic frameworks (COFs) have been the focus of much development. Here we introduce mechanical bonds into COFs by employing a method that involves supramolecular self-assembly, dynamic imine-bond formation, and liquid-liquid interfacial condensation and produces a continuous 2D polyrotaxaneted film. A diamino-viologen linker is complexed with the macrocycle cucurbit[7]uril (CB[7]) to form pseudorotaxanes that then condense with an aromatic tri-aldehyde core at the interface of two solvents. The unrotaxanated COF is prepared by condensing the viologen and the trialdehyde in the absence of CB[7], and the chemical and physical properties of the formed films are compared. The CB[7]–encapsulated film is mechanically and thermally more robust and more luminescent. The synthetic strategy presented here allows the incorporation of mechanically interlocked molecules (MIMs) into polymeric materials and provides access to materials that have properties and functionalities that are yet to be explored. The incorporation of mechanical bonds into porous materials offers opportunities for new functionality. Here a covalent organic framework is synthesized by polymerization of a cucurbituril-viologen complex, imparting improved thickness, stability, and luminescence compared to the unrotaxanated viologen-based COF. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
34. Ring shape-dependent self-sorting of pillar[n]arenes assembled on a surface.
- Author
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Ogoshi, Tomoki, Takashima, Shu, Inada, Natsumi, Asakawa, Hitoshi, Fukuma, Takeshi, Shoji, Yoshiaki, Kajitani, Takashi, Fukushima, Takanori, Tada, Tomofumi, Dotera, Tomonori, Kakuta, Takahiro, and Yamagishi, Tada-aki
- Subjects
MOLECULAR self-assembly ,SURFACE chemistry ,SUPRAMOLECULAR chemistry ,CHEMICAL affinity ,CHARGE-charge interactions - Abstract
Self-sorting, in which multiple components selectively assemble themselves by recognising self from others, is an attractive approach to produce supramolecular assemblies with controlled structures. Lock-and-key type complementary physical interactions are required for self-sorting because selective affinity is necessary to distinguish self from others. Here we show self-sorting behaviour based on a principle of geometrical complementarity by shape during our investigation of assembly of pentagonal pillar[5]arenes and hexagonal pillar[6]arenes on a surface. In the homoassembly systems, anionic pillar[5]arenes and pillar[6]arenes are adsorbed onto positively charged layers of cationic pillar[5]arenes and pillar[6]arenes, respectively, through cationic-anionic electrostatic interactions. In contrast, ionic pillar[5]arenes are adsorbed onto layers constructed from oppositely charged pillar[5]arenes, but ionic pillar[6]arenes are not. Equally, for the reverse combination, ionic pillar[6]arenes are adsorbed onto layers constructed from oppositely charged pillar[6]arenes, but ionic pillar[5]arenes are not. The geometrical complementarity by shape realises effective self-sorting even in non-directional multivalent ionic interactions. Self-sorting is an attractive approach to produce complex supramolecular systems and materials with controlled structures. Here the authors show geometrical complementarity in the self-sorting behaviour of pentagonal and hexagonal pillararenes on heterogeneous surface through layer-by-layer deposition. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
35. Oligoacetylacetones as shapable carbon chains and their transformation to oligoimines for construction of metal-organic architectures.
- Author
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Uesaka, Mitsuharu, Saito, Yuki, Yoshioka, Shota, Domoto, Yuya, Fujita, Makoto, and Inokuma, Yasuhide
- Subjects
ACETONE ,METAL-organic frameworks ,CONFORMATIONAL analysis ,NANOFABRICATION ,DEGREES of freedom - Abstract
Flexible chain-like molecules can adopt various conformations, but fabrication of complex and higher-order architectures by chain networking or coiling is still a difficult task in organic chemistry. As the degree of freedom increases, the large entropy loss impedes conformation and orientation fixing. Here we report oligo (3,3-dimethylpentane-2,4-dione)s as flexible and shapable carbon chains with many carbonyl groups for chemical modification. Polycarbonylated chains of various lengths are synthesized by terminal-selective silylation and oxidative coupling reactions using silver(I) oxide. We use reactions of 1,3-diketones and 1,4-diketones to reduce the chain length and to induce favourable conformations. When the chains are treated with hydrazine, all the carbonyl groups are converted to imine groups, resulting in the formation of multidentate ligands. Finally, a two-dimensional sheet-like structure and a cylindrical assembly are generated by respectively networking and coiling the carbon chains, with the aid of metal coordination. Constructing metal-organic architectures with flexible organic linkers is challenging as there is an entropic barrier to their adopting well-defined conformations. Here the authors use oligoketones as precursors to flexible oligoimine linkers for two-dimensional and three-dimensional metal-organic assemblies. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
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