1. Hotspots of Transmission Driving the Local Human Immunodeficiency Virus Epidemic in the Cologne-Bonn Region, Germany
- Author
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Stecher, Melanie, Hoenigl, Martin, Eis-Hübinger, Anna Maria, Lehmann, Clara, Fätkenheuer, Gerd, Wasmuth, Jan-Christian, Knops, Elena, Vehreschild, Jörg Janne, Mehta, Sanjay, and Chaillon, Antoine
- Subjects
Medical Microbiology ,Biomedical and Clinical Sciences ,HIV/AIDS ,Infectious Diseases ,Infection ,Good Health and Well Being ,Adult ,Epidemics ,Female ,Gene Flow ,Genes ,pol ,Genetic Linkage ,Germany ,HIV Infections ,HIV-1 ,Hospitals ,University ,Humans ,Male ,Middle Aged ,Multigene Family ,Phylogeography ,Public Health ,Retrospective Studies ,Sequence Analysis ,RNA ,Spatio-Temporal Analysis ,Travel ,HIV transmission ,geospatial dispersial ,phylogeographic analyses ,public health ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences - Abstract
BackgroundGeographical allocation of interventions focusing on hotspots of human immunodeficiency virus (HIV) transmission has the potential to improve efficiency. We used phylogeographic analyses to identify hotspots of the HIV transmission in Cologne-Bonn, Germany.MethodsWe included 714 HIV-1 infected individuals, followed up at the University Hospitals Cologne and Bonn. Distance-based molecular network analyses were performed to infer putative relationships. Characteristics of genetically linked individuals and assortativity (shared characteristics) were analyzed. Geospatial diffusion (ie, viral gene flow) was evaluated using a Slatkin-Maddison approach. Geospatial dispersal was determined by calculating the average distance between the residences of linked individuals (centroids of 3-digit zip code).ResultsIn sum, 217/714 (30.4%) sequences had a putative genetic linkage, forming 77 clusters (size range: 2-8). Linked individuals were more likely to live in areas surrounding the city center (P = .043),
- Published
- 2019