35 results on '"Utah Health"'
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2. Biological Testing and Interpretation of Laboratory Results Associated with Detecting Newborns with Substance Exposure.
- Author
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McMillin GA, Morad AW, Boyd JM, Johnson-Davis KL, Metz TD, Smid MC, and Krasowski MD
- Subjects
- Humans, Infant, Newborn, Pregnancy, Female, Substance-Related Disorders diagnosis, Substance-Related Disorders urine, Immunoassay methods, Umbilical Cord, Maternal Exposure adverse effects, Substance Abuse Detection methods, Meconium chemistry
- Abstract
Background: Substance use during pregnancy is common, as is biological testing that is intended to help identify prenatal exposures. However, there is no standardized requirement for biological testing with either maternal or newborn specimens, nor is there standardization related to when testing occurs, how frequently testing occurs, what specimen(s) to test, what substances to test for, or how to perform testing., Content: We review common specimen types tested to detect maternal and newborn substance exposure with a focus on urine, meconium, and umbilical cord tissue. We also review common analytical methods used to perform testing, including immunoassay, and mass spectrometry platforms. Considerations regarding the utilization of testing relative to the purpose of testing, the drug analyte(s) of interest, the specific testing employed, and the interpretation of results are emphasized to help guide decisions about clinical utilization of testing. We also highlight specific examples of unexpected results that can be used to guide interpretation and appropriate next steps., Summary: There are strengths and limitations associated with all approaches to detecting substance exposure in pregnant persons as well as biological testing to evaluate a newborn with possible substance exposure. Standardization is needed to better inform decisions surrounding evaluation of substance exposures in pregnant people and newborns. If biological sampling is pursued, testing options and results must be reviewed in clinical context, acknowledging that false-positive and -negative results can and do occur., (© Association for Diagnostics & Laboratory Medicine 2024.)
- Published
- 2024
- Full Text
- View/download PDF
3. An Update on Reported Adoption of 2021 CKD-EPI Estimated Glomerular Filtration Rate Equations.
- Author
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Genzen JR, Souers RJ, Pearson LN, Manthei DM, Chambliss AB, Shajani-Yi Z, and Miller WG
- Subjects
- Humans, Glomerular Filtration Rate, Algorithms, Creatinine, Renal Insufficiency, Chronic diagnosis
- Published
- 2023
- Full Text
- View/download PDF
4. Commentary on Unexpected Fentanyl Detection during a Liver Transplant Evaluation.
- Author
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Pandya V
- Subjects
- Humans, Liver Transplantation, Fentanyl analysis
- Published
- 2023
- Full Text
- View/download PDF
5. One Bad Apple Can Spoil the Bunch: The Impact of Contamination in the Clinical Laboratory.
- Author
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Brown HM, Farnsworth CW, Bryan A, Genzen JR, Gronowski A, Philips Deeter J, and Yarbrough M
- Subjects
- Humans, Chemistry, Analytic standards, Clinical Laboratory Services standards, Laboratories, Clinical standards
- Published
- 2023
- Full Text
- View/download PDF
6. Measurement of Immature Reticulocytes in Dried Blood Spots by Mass Spectrometry.
- Author
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Cox HD, Miller GD, Manandhar A, Husk JD, Jia X, Marvin J, Ward DM, Phillips J, and Eichner D
- Subjects
- Chromatography, Liquid methods, Humans, Longitudinal Studies, Reproducibility of Results, Tandem Mass Spectrometry methods, Dried Blood Spot Testing methods, Reticulocytes
- Abstract
Background: Immature reticulocytes (IRC) are the first cells to respond to changes in erythropoiesis. For antidoping applications, measurement of IRC may improve detection of blood doping practices. Unfortunately, this small cell population has limited stability in liquid blood samples and is difficult to measure with optimal precision. We developed a method to measure 3 IRC membrane proteins in dried blood spots (DBS) to monitor changes in erythropoiesis., Methods: DBS spots were washed with buffers to remove soluble proteins, membrane proteins remaining in the spot were digested with trypsin, and one peptide for each protein was measured by LC-MS/MS. IRC protein concentration was determined using a DBS single point calibrator., Results: Intraassay precision for IRC proteins was between 5%-15%. IRC proteins were stable in DBS for 29 days at room temperature. In a longitudinal study of 25 volunteers, the mean intraindividual variation for 3 IRC proteins was 17%, 20%, and 24% from capillary blood DBS. In comparison, the mean longitudinal variation for IRC counts measured on an automated hematology analyzer was 38%. IRC protein concentration from capillary blood DBS correlated well with venous blood DBS protein concentrations., Conclusions: Measurement of IRC proteins in DBS samples provides a method to measure changes in erythropoiesis with improved analytical sensitivity, stability, and precision. When combined with the inherent advantages of capillary blood collection in the field, this method may substantially improve the detection of blood doping practices., (© American Association for Clinical Chemistry 2021. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2021
- Full Text
- View/download PDF
7. Commentary on Extreme Hyperglycemia in an Elderly Patient.
- Author
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Doyle K
- Subjects
- Aged, Humans, Hyperglycemia, Hyponatremia
- Published
- 2021
- Full Text
- View/download PDF
8. Diagnosis of Hemoglobinopathy and β-Thalassemia by 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry and Tandem Mass Spectrometry of Hemoglobin from Blood.
- Author
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He L, Rockwood AL, Agarwal AM, Anderson LC, Weisbrod CR, Hendrickson CL, and Marshall AG
- Subjects
- Amino Acid Sequence, Cyclotrons, Genetic Variation, Hemoglobinopathies genetics, Humans, Sensitivity and Specificity, Sequence Analysis, Protein methods, alpha-Globins chemistry, beta-Globins chemistry, beta-Thalassemia genetics, delta-Globins chemistry, Fourier Analysis, Hemoglobinopathies blood, Hemoglobins chemistry, Mass Spectrometry methods, Tandem Mass Spectrometry methods, beta-Thalassemia blood
- Abstract
Background: Hemoglobinopathies and thalassemias are the most common genetically determined disorders. Current screening methods include cation-exchange HPLC and electrophoresis, the results of which can be ambiguous because of limited resolving power. Subsequently, laborious genetic testing is required for confirmation., Methods: We performed a top-down tandem mass spectrometry (MS/MS) approach with a fast data acquisition (3 min), ultrahigh mass accuracy, and extensive residue cleavage by use of positive electrospray ionization 21 Tesla Fourier transform ion cyclotron resonance-tandem mass spectrometry (21 T FT-ICR MS/MS) for hemoglobin (Hb) variant de novo sequencing and β-thalassemia diagnosis., Results: We correctly identified all Hb variants in blind analysis of 18 samples, including the first characterization of homozygous Hb Himeji variant. In addition, an Hb heterozygous variant with isotopologue mass spacing as small as 0.0194 Da (Hb AD) was resolved in both precursor ion mass spectrum (MS1) and product ion mass spectrum (MS2). In blind analysis, we also observed that the abundance ratio between intact δ and β subunits (δ/β) or the abundance ratio between intact δ and α subunits (δ/α) could serve to diagnose β-thalassemia trait caused by a mutation in 1 HBB gene., Conclusions: We found that 21 T FT-ICR MS/MS provides a benchmark for top-down MS/MS analysis of blood Hb. The present method has the potential to be translated to lower resolving power mass spectrometers (lower field FT-ICR mass spectrometry and Orbitrap) for Hb variant analysis (by MS1 and MS2) and β-thalassemia diagnosis (MS1)., (© 2019 American Association for Clinical Chemistry.)
- Published
- 2019
- Full Text
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9. Integrated Extreme Real-Time PCR and High-Speed Melting Analysis in 52 to 87 Seconds.
- Author
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Myrick JT, Pryor RJ, Palais RA, Ison SJ, Sanford L, Dwight ZL, Huuskonen JJ, Sundberg SO, and Wittwer CT
- Subjects
- Clostridioides difficile genetics, DNA Copy Number Variations, DNA, Bacterial metabolism, DNA, Viral metabolism, Genotype, Hepatitis B virus genetics, Humans, Microfluidics, Phase Transition, Time Factors, Transition Temperature, DNA, Bacterial analysis, DNA, Viral analysis, Real-Time Polymerase Chain Reaction methods
- Abstract
Background: Extreme PCR in <30 s and high-speed melting of PCR products in <5 s are recent advances in the turnaround time of DNA analysis. Previously, these steps had been performed on different specialized instruments. Integration of both extreme PCR and high-speed melting with real-time fluorescence monitoring for detection and genotyping is presented here., Methods: A microfluidic platform was enhanced for speed using cycle times as fast as 1.05 s between 66.4 °C and 93.7 °C, with end point melting rates of 8 °C/s. Primer and polymerase concentrations were increased to allow short cycle times. Synthetic sequences were used to amplify fragments of hepatitis B virus (70 bp) and Clostridium difficile (83 bp) by real-time PCR and high-speed melting on the same instrument. A blinded genotyping study of 30 human genomic samples at F2 c.*97, F5 c.1601, MTHFR c.665, and MTHFR c.1286 was also performed., Results: Standard rapid-cycle PCR chemistry did not produce any product when total cycling times were reduced to <1 min. However, efficient amplification was possible with increased primer (5 μmol/L) and polymerase (0.45 U/μL) concentrations. Infectious targets were amplified and identified in 52 to 71 s. Real-time PCR and genotyping of single-nucleotide variants from human DNA was achieved in 75 to 87 s and was 100% concordant to known genotypes., Conclusions: Extreme PCR with high-speed melting can be performed in about 1 min. The integration of extreme PCR and high-speed melting shows that future molecular assays at the point of care for identification, quantification, and variant typing are feasible., (© 2018 American Association for Clinical Chemistry.)
- Published
- 2019
- Full Text
- View/download PDF
10. The Effect of Single Mismatches on Primer Extension.
- Author
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Rejali NA, Moric E, and Wittwer CT
- Subjects
- Humans, Kinetics, Temperature, Base Pair Mismatch, DNA Primers genetics
- Abstract
Background: Allele-specific PCR is an important diagnostic tool that identifies single-nucleotide variants by preferential amplification of a particular allele, using primers that are mismatched to all but one allele variant., Methods: We applied a fluorescent stopped-flow polymerase assay to measure extension rates from oligonucleotide hairpins to simulate primer-template pairs. Under PCR-applicable conditions, reaction rates were recorded in nucleotides per second per polymerase (nt/s/poly). The effects of temperature, potassium chloride, mismatch type, and position were studied with primarily a deletion mutant of Thermus aquaticus ( Taq ) DNA polymerase and 135 oligonucleotide sequences., Results: Rates at 65 °C were between 205 ± 11 and 177 ± 8 nt/s/poly for matched templates and between 4.55 ± 0.21 and 0.008 ± 0.005 nt/s/poly for 3'-mismatched templates. Although extension rates progressively increased with mismatches further away from the 3' end, rates were still reduced by as much as 84% with a C · C mismatch 6 bases from the 3' end. The optimal extension temperature for matched sequences was 70 °C, shifting to 55-60 °C for 3' mismatches. KCl inhibited mismatch extension. The Michaelis constant ( K
m ) was increased and the apparent unimolecular rate constant (kcat ) decreased for 3' mismatches relative to matched templates., Conclusions: Although primer extension of mismatches depends on mismatch type and position, variation also depends on local sequence, KCl concentration, and the type of polymerase. Introduction of 3' mismatches reduces the optimal temperature for extension, suggesting higher annealing temperatures for better allele discrimination. Quantitative descriptions of expected specificity in allele-specific PCR provide additional design direction and suggest when other methods (e.g., high-resolution melting analysis) may be a better choice., (© 2018 American Association for Clinical Chemistry.)- Published
- 2018
- Full Text
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11. High-Speed Melting Analysis: The Effect of Melting Rate on Small Amplicon Microfluidic Genotyping.
- Author
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Pryor RJ, Myrick JT, Palais RA, Sundberg SO, Paek JY, Wittwer CT, and Knight IT
- Subjects
- Equipment Design, Genotype, Genotyping Techniques economics, Genotyping Techniques instrumentation, Heterozygote, Homozygote, Humans, Microfluidic Analytical Techniques economics, Microfluidic Analytical Techniques instrumentation, Polymerase Chain Reaction economics, Polymerase Chain Reaction instrumentation, Time Factors, DNA genetics, Genotyping Techniques methods, Microfluidic Analytical Techniques methods, Nucleic Acid Denaturation, Polymerase Chain Reaction methods, Polymorphism, Single Nucleotide
- Abstract
Background: High-resolution DNA melting analysis of small amplicons is a simple and inexpensive technique for genotyping. Microfluidics allows precise and rapid control of temperature during melting., Methods: Using a microfluidic platform for serial PCR and melting analysis, 4 targets containing single nucleotide variants were amplified and then melted at different rates over a 250-fold range from 0.13 to 32 °C/s. Genotypes (n = 1728) were determined manually by visual inspection after background removal, normalization, and conversion to negative derivative plots. Differences between genotypes were quantified by a genotype discrimination ratio on the basis of inter- and intragenotype differences using the absolute value of the maximum vertical difference between curves as a metric., Results: Different homozygous curves were genotyped by melting temperature and heterozygous curves were identified by shape. Technical artifacts preventing analysis (0.3%), incorrect (0.06%), and indeterminate (0.4%) results were minimal, occurring mostly at slow melting rates (0.13-0.5 °C/s). Genotype discrimination was maximal at around 8 °C/s (2-8 °C/s for homozygotes and 8-16 °C/s for heterozygotes), and no genotyping errors were made at rates >0.5 °C/s. PCR was completed in 10-12.2 min, followed by melting curve acquisition in 4 min down to <1 s., Conclusions: Microfluidics enables genotyping by melting analysis at rates up to 32 °C/s, requiring <1 s to acquire an entire melting curve. High-speed melting reduces the time for melting analysis, decreases errors, and improves genotype discrimination of small amplicons. Combined with extreme PCR, high-speed melting promises nucleic acid amplification and genotyping in < 1 min., (© 2017 American Association for Clinical Chemistry.)
- Published
- 2017
- Full Text
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12. Portable Nanopore Sequencing for Viral Surveillance.
- Author
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Wittwer CT
- Subjects
- DNA, Nanopores, Nanotechnology
- Published
- 2016
- Full Text
- View/download PDF
13. Elderly female with a personal and family history of a bleeding disorder.
- Author
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Desai DS, Lyon E, Rodgers GM, Jama MA, Wallentine SL, and Smock KJ
- Subjects
- Aged, Blood Coagulation Disorders, Inherited etiology, Female, Hemorrhage etiology, Humans, Mutation, Partial Thromboplastin Time, Pedigree, Platelet Aggregation, Prothrombin Time, Thrombocytopenia etiology, von Willebrand Diseases blood, von Willebrand Diseases genetics, von Willebrand Factor analysis, von Willebrand Factor chemistry, Blood Coagulation Disorders, Inherited diagnosis, von Willebrand Diseases diagnosis, von Willebrand Factor genetics
- Published
- 2015
- Full Text
- View/download PDF
14. Microfluidic genotyping by rapid serial PCR and high-speed melting analysis.
- Author
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Sundberg SO, Wittwer CT, Howell RM, Huuskonen J, Pryor RJ, Farrar JS, Stiles HM, Palais RA, and Knight IT
- Subjects
- DNA genetics, Equipment Design, Factor V genetics, Genotype, Genotyping Techniques instrumentation, Heterozygote, Homozygote, Humans, Methylenetetrahydrofolate Reductase (NADPH2) genetics, Microfluidic Analytical Techniques instrumentation, Polymerase Chain Reaction instrumentation, Polymorphism, Single Nucleotide, Transition Temperature, Genotyping Techniques methods, Microfluidic Analytical Techniques methods, Polymerase Chain Reaction methods
- Abstract
Background: Clinical molecular testing typically batches samples to minimize costs or uses multiplex lab-on-a-chip disposables to analyze a few targets. In genetics, multiple variants need to be analyzed, and different work flows that rapidly analyze multiple loci in a few targets are attractive., Methods: We used a microfluidic platform tailored to rapid serial PCR and high-speed melting (HSM) to genotype 4 single nucleotide variants. A contiguous stream of master mix with sample DNA was pulsed with each primer pair for serial PCR and melting. Two study sites each analyzed 100 samples for F2 (c.*97G>A), F5 (c.1601G>A), and MTHFR (c.665C>T and c.1286A>C) after blinding for genotype and genotype proportions. Internal temperature controls improved melting curve precision. The platform's liquid-handling system automated PCR and HSM., Results: PCR and HSM were completed in a total of 12.5 min. Melting was performed at 0.5 °C/s. As expected, homozygous variants were separated by melting temperature, and heterozygotes were identified by curve shape. All samples were correctly genotyped by the instrument. Follow-up testing was required on 1.38% of the assays for a definitive genotype., Conclusions: We demonstrate genotyping accuracy on a novel microfluidic platform with rapid serial PCR and HSM. The platform targets short turnaround times for multiple genetic variants in up to 8 samples. It is also designed to allow automatic and immediate reflexive or repeat testing depending on results from the streaming DNA. Rapid serial PCR provides a flexible genetic work flow and is nicely matched to HSM analysis., (© 2014 American Association for Clinical Chemistry.)
- Published
- 2014
- Full Text
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15. Influence of PCR reagents on DNA polymerase extension rates measured on real-time PCR instruments.
- Author
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Montgomery JL and Wittwer CT
- Subjects
- Cations, Monovalent chemistry, Hot Temperature, Indicators and Reagents, Time Factors, DNA chemistry, DNA-Directed DNA Polymerase analysis, Fluorescent Dyes chemistry, Real-Time Polymerase Chain Reaction instrumentation, Real-Time Polymerase Chain Reaction methods
- Abstract
Background: Radioactive DNA polymerase activity methods are cumbersome and do not provide initial extension rates. A simple extension rate assay would enable study of basic assumptions about PCR and define the limits of rapid PCR., Methods: A continuous assay that monitors DNA polymerase extension using noncovalent DNA dyes on common real-time PCR instruments was developed. Extension rates were measured in nucleotides per second per molecule of polymerase. To initiate the reaction, a nucleotide analog was heat activated at 95 °C for 5 min, the temperature decreased to 75 °C, and fluorescence monitored until substrate exhaustion in 30-90 min., Results: The assay was linear with time for over 40% of the reaction and for polymerase concentrations over a 100-fold range (1-100 pmol/L). Extension rates decreased continuously with increasing monovalent cation concentrations (lithium, sodium, potassium, cesium, and ammonium). Melting-temperature depressors had variable effects. DMSO increased rates up to 33%, whereas glycerol had little effect. Betaine, formamide, and 1,2-propanediol decreased rates with increasing concentrations. Four common noncovalent DNA dyes inhibited polymerase extension. Heat-activated nucleotide analogs were 92% activated after 5 min, and hot start DNA polymerases were 73%-90% activated after 20 min., Conclusions: Simple DNA extension rate assays can be performed on real-time PCR instruments. Activity is decreased by monovalent cations, DNA dyes, and most melting temperature depressors. Rational inclusion of PCR components on the basis of their effects on polymerase extension is likely to be useful in PCR, particularly rapid-cycle or fast PCR.
- Published
- 2014
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16. Commentary.
- Author
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Agarwal AM and Nussenzveig R
- Subjects
- Female, Humans, Male, Anemia diagnosis, Cyanosis diagnosis, Physical Exertion, beta-Globins genetics
- Published
- 2012
- Full Text
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17. Investigating interferences of a whole-blood point-of-care creatinine analyzer: comparison to plasma enzymatic and definitive creatinine methods in an acute-care setting.
- Author
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Straseski JA, Lyon ME, Clarke W, Dubois JA, Phelan LA, and Lyon AW
- Subjects
- Enzymes, False Negative Reactions, Female, Glomerular Filtration Rate, Humans, Indicator Dilution Techniques, Indicators and Reagents, Inpatients, Intensive Care Units, Kidney Diseases blood, Kidney Diseases diagnosis, Linear Models, Male, Mass Spectrometry, Middle Aged, Multivariate Analysis, Oncology Service, Hospital, Reference Standards, Creatinine blood, Point-of-Care Systems standards
- Abstract
Background: Although measurement of whole-blood creatinine at the point of care offers rapid assessment of renal function, agreement of point-of-care (POC) results with central laboratory methods continues to be a concern. We assessed the influence of several potential interferents on POC whole-blood creatinine measurements., Methods: We compared POC creatinine (Nova StatSensor) measurements with plasma enzymatic (Roche Modular) and isotope dilution mass spectrometry (IDMS) assays in 119 hospital inpatients. We assessed assay interference by hematocrit, pH, pO(2), total and direct bilirubin, creatine, prescribed drugs, diagnosis, red blood cell water fraction, and plasma water fraction., Results: CVs for POC creatinine were 1.5- to 6-fold greater than those for plasma methods, in part due to meter-to-meter variation. Regressioncomparison of POC creatinine to IDMS results gave a standard error (S(y|x)) of 0.61 mg/dL (54 μmol/L), whereas regression of plasma enzymatic creatinine to IDMS was S(y|x) 0.16 mg/dL (14 μmol/L). By univariate analysis, bilirubin, creatine, drugs, pO(2), pH,plasma water fraction, and hematocrit were not found to contribute to method differences. However, multivariate analysis revealed that IDMS creatinine, red blood cell and plasma water fractions, and hematocrit explained 91.8% of variance in POC creatinine results., Conclusions: These data suggest that whole-blood POC creatinine measurements should be used with caution. Negative interferences observed with these measurements could erroneously suggest adequate renal function near the decision threshold, particularly if estimated glomerular filtration rate is determined. Disparity between whole-blood and plasma matrices partially explains the discordance between whole-blood and plasma creatinine methods.
- Published
- 2011
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18. Snapback primer genotyping of the Gilbert syndrome UGT1A1 (TA)(n) promoter polymorphism by high-resolution melting.
- Author
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Farrar JS, Palais RA, and Wittwer CT
- Subjects
- Black or African American, DNA Primers, Genotype, Humans, Polymerase Chain Reaction, Polymorphism, Genetic, TATA Box, Transition Temperature, Gilbert Disease genetics, Glucuronosyltransferase genetics
- Abstract
Background: Gilbert syndrome, a chronic nonhemolytic unconjugated hyperbilirubinemia, is associated with thymine-adenine (TA) insertions in the UGT1A1 (UDP glucuronosyltransferase 1 family, polypeptide A1) promoter. The UGT1A1 promoter genotype also correlates with toxicity induced by the chemotherapeutic drug irinotecan. Current closed-tube assays for genotyping the UGT1A1 (TA)(n) promoter polymorphism require multiple labeled probes and/or have difficulty classifying the (TA)(5) and (TA)(8) alleles., Methods: An unlabeled 5' extension on one primer that creates a hairpin after asymmetric PCR was used to develop a snapback primer high-resolution melting assay for the (TA)(n) polymorphism. A new method that plots the local deviation from exponential decay to improve genotype clustering was used to remove background fluorescence and to analyze the data. The snapback assay was compared with small-amplicon melting and fragment length analyses in a blinded study of DNA samples from 100 African Americans., Results: Genotyping results obtained by small-amplicon melting and snapback primer melting were 83% and 99% concordant, respectively, with results obtained by fragment analysis. Reanalysis of the single discordant sample in the results of the snapback genotyping assay and the fragment analysis revealed an error in the fragment analysis. High-resolution melting was required for accurate snapback genotyping of the UGT1A1 (TA)(n) polymorphism. The 100% accuracy obtained with a capillary-based instrument fell to ≤81% with plate-based instruments., Conclusions: In contrast to small-amplicon genotyping, snapback primer genotyping can distinguish all UGT1A1 promoter genotypes. Rapid-cycle PCR combined with snapback primer analysis with only 2 unlabeled PCR primers (one with a 5' extension) and a saturating DNA dye can genotype loci with several alleles in <30 min.
- Published
- 2011
- Full Text
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19. Falsely decreased human chorionic gonadotropin (hCG) results due to increased concentrations of the free beta subunit and the beta core fragment in quantitative hCG assays.
- Author
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Grenache DG, Greene DN, Dighe AS, Fantz CR, Hoefner D, McCudden C, Sokoll L, Wiley CL, and Gronowski AM
- Subjects
- Chorionic Gonadotropin, beta Subunit, Human blood, Chorionic Gonadotropin, beta Subunit, Human urine, False Negative Reactions, Female, Humans, Immunoassay, Neoplasms blood, Neoplasms urine, Peptide Fragments blood, Peptide Fragments urine, Pregnancy, Reference Values, Chorionic Gonadotropin blood, Chorionic Gonadotropin urine
- Abstract
Background: Earlier studies have shown that increased concentrations of certain human chorionic gonadotropin (hCG) variants can cause false-negative results in some qualitative hCG devices. The objective of this study was to determine if increased concentrations of hCGβ and hCGβ core fragment (hCGβcf) cause falsely decreased results on 9 commercially available quantitative hCG assays., Methods: Several concentrations of purified hCGβ and hCGβcf were added to 2 sets of 6 serum samples with and without a fixed concentration of intact hCG. We examined 9 widely used immunoassays to measure immunoreactive hCG. Falsely decreased results were defined as those in which the measured hCG concentration was ≤50% of expected., Results: High concentrations of hCGβ (≥240 000 pmol/L) produced falsely decreased hCG measurements in 2 assays known to detect this variant. Similarly, high concentrations of hCGβcf (≥63 000 pmol/L) produced falsely decreased hCG measurements in 3 assays that do not detect purified hCGβcf. Two assays were identified that detected both hCGβ and hCGβcf, and neither produced falsely decreased results in the presence of high concentrations of these variants., Conclusions: Extremely high concentrations of hCG variants can cause falsely decreased results in certain quantitative hCG assays. Of the 9 assays examined, none exhibited falsely decreased results in the presence of hCGβ concentrations typically associated with hCGβ-producing malignancies. Two assays exhibited decreased (>50%) hCG results in the presence of hCGβcf concentrations found during normal pregnancy.
- Published
- 2010
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20. An unlikely pregnancy.
- Author
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Greene DN, Hall BJ, and Grenache DG
- Subjects
- False Positive Reactions, Female, Humans, Middle Aged, Point-of-Care Systems, Pregnancy, Chorionic Gonadotropin blood, Chorionic Gonadotropin urine, Pregnancy Tests methods
- Published
- 2010
- Full Text
- View/download PDF
21. Making DNA melting useful.
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Wittwer CT
- Subjects
- DNA genetics, Fluorescent Dyes, Genotype, Heteroduplex Analysis, Hot Temperature, Humans, Nucleic Acid Denaturation, Polymerase Chain Reaction methods, Polymorphism, Genetic, DNA analysis
- Published
- 2010
- Full Text
- View/download PDF
22. Which dose of busulfan is best?
- Author
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Johnson-Davis KL, McMillin GA, Juenke JM, Ford CD, and Petersen FB
- Subjects
- Antineoplastic Agents, Alkylating pharmacokinetics, Busulfan pharmacokinetics, Drug Administration Schedule, Drug Monitoring, Female, Hematopoietic Stem Cell Transplantation, Humans, Young Adult, Antineoplastic Agents, Alkylating administration & dosage, Busulfan administration & dosage, Hodgkin Disease therapy
- Published
- 2010
- Full Text
- View/download PDF
23. Enrichment and detection of rare alleles by means of snapback primers and rapid-cycle PCR.
- Author
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Zhou L, Palais RA, Smith GD, Anderson D, Rowe LR, and Wittwer CT
- Subjects
- Cell Line, Humans, Limit of Detection, Lung Neoplasms genetics, Polymerase Chain Reaction economics, Thyroid Neoplasms genetics, Alleles, DNA Primers genetics, ErbB Receptors genetics, Mutation, Polymerase Chain Reaction methods, Proto-Oncogene Proteins B-raf genetics
- Abstract
Background: Selective amplification of minority alleles is often necessary to detect cancer mutations in clinical samples., Methods: Minor-allele enrichment and detection were performed with snapback primers in the presence of a saturating DNA dye within a closed tube. A 5' tail of nucleotides on 1 PCR primer hybridizes to the variable locus of its extension product to produce a hairpin that selectively enriches mismatched alleles. Genotyping performed after rapid-cycle PCR by melting of the secondary structure identifies different variants by the hairpin melting temperature (T(m)). Needle aspirates of thyroid tissue (n = 47) and paraffin-embedded biopsy samples (n = 44) were analyzed for BRAF (v-raf murine sarcoma viral oncogene homolog B1) variant p.V600E, and the results were compared with those for dual hybridization probe analysis. Needle aspirates of lung tumors (n = 8) were analyzed for EGFR [epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)] exon 19 in-frame deletions., Results: Use of 18-s cycles and momentary extension times of "0 s" with rapid-cycle PCR increased the selective amplification of mismatched alleles. A low Mg(2+) concentration and a higher hairpin T(m) relative to the extension temperature also improved the detection limit of mismatched alleles. The detection limit was 0.1% for BRAF p.V600E and 0.02% for EGFR exon 19 in-frame deletions. Snapback and dual hybridization probe methods for allele quantification of the thyroid samples correlated well (R(2) = 0.93) with 2 more BRAF mutations (45 and 43, respectively, of 91 samples) detected after snapback enrichment. Different EGFR in-frame deletions in the lung samples produced different hairpin T(m)s., Conclusions: Use of snapback primers for enrichment and detection of minority alleles is simple, is inexpensive to perform, and can be completed in a closed tube in <25 min.
- Published
- 2010
- Full Text
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24. Snapback primer genotyping with saturating DNA dye and melting analysis.
- Author
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Zhou L, Errigo RJ, Lu H, Poritz MA, Seipp MT, and Wittwer CT
- Subjects
- Base Sequence, DNA chemistry, DNA Primers, Humans, Polymerase Chain Reaction, Polymorphism, Single-Stranded Conformational, Coloring Agents chemistry, DNA genetics
- Abstract
Background: DNA hairpins have been used in molecular analysis of PCR products as self-probing amplicons. Either physical separation or fluorescent oligonucleotides with covalent modifications were previously necessary., Methods: We performed asymmetric PCR for 40-45 cycles in the presence of the saturating DNA dye, LCGreen Plus, with 1 primer including a 5' tail complementary to its extension product, but without any special covalent modifications. Samples were amplified either on a carousel LightCycler for speed or on a 96/384 block cycler for throughput. In addition to full-length amplicon duplexes, single-stranded hairpins were formed by the primer tail "snapping back" and hybridizing to its extension product. High-resolution melting was performed on a HR-1 (for capillaries) or a LightScanner (for plates)., Results: PCR products amplified with a snapback primer showed both hairpin melting at lower temperature and full-length amplicon melting at higher temperature. The hairpin melting temperature was linearly related to the stem length (6-28 bp) and inversely related to the log of the loop size (17-135 bases). We easily genotyped heterozygous and homozygous variants within the stem, and 100 blinded clinical samples previously typed for F5 1691G>A (Leiden) were completely concordant by snapback genotyping. We distinguished 7 genotypes in 2 regions of CFTR exon 10 with symmetric PCR using 2 snapback primers followed by product dilution to favor intramolecular hybridization., Conclusions: Snapback primer genotyping with saturating dyes provides the specificity of a probe with only 2 primers that are free of special covalent labels in a closed-tube system.
- Published
- 2008
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25. Scanning the cystic fibrosis transmembrane conductance regulator gene using high-resolution DNA melting analysis.
- Author
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Montgomery J, Wittwer CT, Kent JO, and Zhou L
- Subjects
- Blood Donors, DNA blood, Exons, Genetic Variation, Genotype, Heterozygote, Humans, Polymerase Chain Reaction, Sequence Analysis, DNA, Transition Temperature, Cystic Fibrosis genetics, Cystic Fibrosis Transmembrane Conductance Regulator genetics, DNA genetics
- Abstract
Background: Complete gene analysis of the cystic fibrosis transmembrane conductance regulator gene (CFTR) by scanning and/or sequencing is seldom performed because of the cost, time, and labor involved. High-resolution DNA melting analysis is a rapid, closed-tube alternative for gene scanning and genotyping., Methods: The 27 exons of CFTR were amplified in 37 PCR products under identical conditions. Common variants in 96 blood donors were identified in each exon by high-resolution melting on a LightScanner(R). We then performed a subsequent blinded study on 30 samples enriched for disease-causing variants, including all 23 variants recommended by the American College of Medical Genetics and 8 additional, well-characterized variants., Results: We identified 22 different sequence variants in 96 blood donors, including 4 novel variants and the disease-causing p.F508del. In the blinded study, all 40 disease-causing heterozygotes (29 unique) were detected, including 1 new probable disease-causing variant (c.3500-2A>T). The number of false-positive amplicons was decreased 96% by considering the 6 most common heterozygotes. The melting patterns of most heterozygotes were unique (37 of 40 pairs within the same amplicon), the exceptions being p.F508del vs p.I507del, p.G551D vs p.R553X, and p.W1282X vs c.4002A>G. The homozygotes p.G542X, c.2789 + 5G>A, and c.3849 + 10kbC>T were directly identified, but homozygous p.F508del was not. Specific genotyping of these exceptions, as well as genotyping of the 5T allele of intron 8, was achieved by unlabeled-probe and small-amplicon melting assays., Conclusions: High-resolution DNA melting methods provide a rapid and accurate alternative for complete CFTR analysis. False positives can be decreased by considering the melting profiles of common variants.
- Published
- 2007
- Full Text
- View/download PDF
26. Identifying common genetic variants by high-resolution melting.
- Author
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Vandersteen JG, Bayrak-Toydemir P, Palais RA, and Wittwer CT
- Subjects
- Endoglin, Exons, Genotype, Heteroduplex Analysis methods, Humans, Transition Temperature, Activin Receptors, Type II genetics, Antigens, CD genetics, Genetic Variation, Receptors, Cell Surface genetics, Telangiectasia, Hereditary Hemorrhagic genetics
- Abstract
Background: Heteroduplex scanning techniques usually detect all heterozygotes, including common variants not of clinical interest., Methods: We conducted high-resolution melting analysis on the 24 exons of the ACVRL1 and ENG genes implicated in hereditary hemorrhagic telangiectasia (HHT). DNA in samples from 13 controls and 19 patients was PCR amplified in the presence of LCGreen I, and all 768 exons melted in an HR-1 instrument. We used 10 wild-type controls to identify common variants, and the remaining samples were blinded, amplified, and analyzed by melting curve normalization and overlay. Unlabeled probes characterized the sequence of common variants., Results: Eleven common variants were associated with 8 of the 24 HHT exons, and 96% of normal samples contained at least 1 variant. As a result, the positive predictive value (PPV) of a heterozygous exon was low (31%), even in a population of predominantly HHT patients. However, all common variants produced unique amplicon melting curves that, when considered and eliminated, resulted in a PPV of 100%. In our blinded study, 3 of 19 heterozygous disease-causing variants were missed; however, 2 were clerical errors, and the remaining false negative would have been identified by difference analysis., Conclusions: High-resolution melting analysis is a highly accurate heteroduplex scanning technique. With many exons, however, use of single-sample instruments may lead to clerical errors, and routine use of difference analysis is recommended. Common variants can be identified by their melting curve profiles and genotyped with unlabeled probes, greatly reducing the false-positive results common with scanning techniques.
- Published
- 2007
- Full Text
- View/download PDF
27. Assay-specific differences in lipemic interference in native and intralipid-supplemented samples.
- Author
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Bornhorst JA, Roberts RF, and Roberts WL
- Subjects
- False Negative Reactions, Fat Emulsions, Intravenous, Humans, Immunoassay methods, Nephelometry and Turbidimetry, Reference Values, Triglycerides blood, Blood Chemical Analysis standards, Lipids blood
- Published
- 2004
- Full Text
- View/download PDF
28. Comparable effects of DIGIBIND and DigiFab in thirteen digoxin immunoassays.
- Author
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McMillin GA, Owen WE, Lambert TL, De BK, Frank EL, Bach PR, Annesley TM, and Roberts WL
- Subjects
- Cardiovascular Agents immunology, Cross Reactions, Digoxin immunology, False Positive Reactions, Humans, Immunoassay, Antidotes analysis, Cardiovascular Agents blood, Digoxin blood, Immunoglobulin Fab Fragments blood
- Published
- 2002
29. Effects of anticoagulants and contemporary blood collection containers on aluminum, copper, and zinc results.
- Author
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Frank EL, Hughes MP, Bankson DD, and Roberts WL
- Subjects
- Blood Specimen Collection, Edetic Acid chemistry, Humans, Aluminum blood, Anticoagulants pharmacology, Blood Chemical Analysis, Copper blood, Zinc blood
- Published
- 2001
30. Evaluation of nine automated high-sensitivity C-reactive protein methods: implications for clinical and epidemiological applications. Part 2.
- Author
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Roberts WL, Moulton L, Law TC, Farrow G, Cooper-Anderson M, Savory J, and Rifai N
- Subjects
- Adolescent, Adult, Aged, Autoanalysis, Blood Donors, Female, Humans, Immunoassay, Luminescent Measurements, Male, Middle Aged, Nephelometry and Turbidimetry, Reagent Kits, Diagnostic, Regression Analysis, C-Reactive Protein analysis
- Abstract
Background: C-Reactive protein (CRP) can provide prognostic information about risk of future coronary events in apparently healthy subjects. This application requires higher sensitivity assays than have traditionally been available in the clinical laboratory., Methods: Nine high-sensitivity CRP (hs-CRP) methods from Dade Behring, Daiichi, Denka Seiken, Diagnostic Products Corporation, Iatron, Kamiya, Olympus, Roche, and Wako were evaluated for limit of detection, linearity, precision, prozone effect, and comparability with samples from 388 apparently healthy individuals., Results: All methods had limits of detection that were lower than the manufacturers' claimed limit of quantification except for the Kamiya, Roche, and Wako methods. All methods were linear at 0.3-10 mg/L. The Diagnostic Products Corporation, Kamiya, Olympus, and Wako methods had imprecision (CVs) >10% at 0.15 mg/L. The Iatron, Olympus, and Wako methods demonstrated prozone effects at hs-CRP concentrations of 12, 206, and 117 mg/L, respectively. hs-CRP concentrations demarcating each quartile in a healthy population were method-dependent. Ninety-two to 95% of subjects were classified into the same quartile of hs-CRP established by the Dade Behring method by the Denka Seiken, Diagnostic Products Corporation, Iatron, and Wako methods. In contrast, 68-77% of subjects were classified into the same quartile by the Daiichi, Kamiya, Olympus, and Roche methods. No subject varied by more than one quartile by any method., Conclusions: Four of the nine examined hs-CRP methods classified apparently healthy subjects into quartiles of hs-CRP similar to the classifications assigned by the comparison method. Additional standardization efforts are required because an individual patient's results will be interpreted using population-based cutpoints.
- Published
- 2001
31. Discontinuation of the bleeding time test without detectable adverse clinical impact.
- Author
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Lehman CM, Blaylock RC, Alexander DP, and Rodgers GM
- Subjects
- Adult, Algorithms, Female, Hemorrhage diagnosis, Hospitals, University, Humans, Laboratories, Hospital, Male, Physicians, Risk, Surveys and Questionnaires, Utah, Bleeding Time
- Abstract
Background: The bleeding time (BT) test predicts a higher bleeding complication rate in populations at risk for inherited or acquired platelet dysfunction, but it is of limited assistance in evaluating individual patients. There are no reports of clinical outcomes after discontinuation of the BT test., Methods: Interviews with a subset of the physicians who had ordered the BT test before discontinuation of the test were conducted. The total number of platelet-aggregation tests, the mean number of monthly, unmodified platelet units transfused, the incidence of kidney biopsy complications, and the number of doses of 1-deamino-8-D-arginine vasopressin (DDAVP) administered 5 months before and after discontinuation of the BT test were compared. We recorded the rates of bleeding complications in the Major Surgery Risk Pool during the 12 months before and the 5 months after the discontinuation of the BT test., Results: Clinicians reported they did not significantly change their preprocedural work-ups, postpone an invasive procedure, experience an increase in bleeding complications, or increase their use of blood products after discontinuation of the BT test. Platelet-aggregation tests (n = 9, before and after), platelet transfusions (P = 0.958), and DDAVP administration (before = 24; after = 10) did not increase after discontinuation of the BT test. The rate of postprocedural bleeding complications did not increase significantly in either Major Surgery Risk Pool cases (<3final sigma deviation from the mean rate) or in patients undergoing renal biopsies (P = 0.225 for decrease in hematocrit; P = 1.000 for the percentage of patients transfused) after discontinuation of the BT test., Conclusions: Our study failed to identify a clinically significant, negative impact of discontinuing the BT test.
- Published
- 2001
32. Hereditary hemochromatosis since discovery of the HFE gene.
- Author
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Lyon E and Frank EL
- Subjects
- Genetic Testing, HLA Antigens metabolism, Hemochromatosis diagnosis, Hemochromatosis metabolism, Hemochromatosis pathology, Hemochromatosis Protein, Histocompatibility Antigens Class I metabolism, Humans, Mutation, Phenotype, Polymerase Chain Reaction, Transferrin analysis, HLA Antigens genetics, Hemochromatosis genetics, Histocompatibility Antigens Class I genetics, Membrane Proteins
- Abstract
Background: Hereditary hemochromatosis is an inherited disorder of iron metabolism that is characterized by excessive iron deposition in major organs of the body. Chronic increased iron absorption leads to multiorgan dysfunction. Since the discovery of the gene responsible for the majority of cases, research has progressed rapidly to identify the gene product, the effects of mutations, and the implications for different populations. The protein product of the HFE gene is a transmembrane glycoprotein, termed HFE, that modulates iron uptake. Mutations in the HFE protein compromise its function and produce disease symptoms. Two mutations, C282Y and H63D, have been linked to the majority of disease cases., Approach: We reviewed the recent literature for the molecular basis of hereditary hemochromatosis. Genotypic information was combined with biochemical and clinical phenotypic information to achieve a better understanding of the disease mechanism., Content: This review provides a comprehensive discussion of known mutations in the HFE gene and their phenotypic expression. Diagnostic criteria using molecular genetic techniques in conjunction with traditional biochemical tests are provided. Current methods and limitations of molecular testing are examined in detail. A strategy for population screening and an algorithm for diagnosis that incorporates molecular testing are presented. Treatment by therapeutic phlebotomy and the use of blood obtained from hemochromatosis patients are discussed., Summary: Although the disease mechanism has not been completely elucidated, phenotypic and penetrance data are becoming available. Controversy still exists concerning the role of genetic testing in diagnosis and population screening.
- Published
- 2001
33. Evaluation of four automated high-sensitivity C-reactive protein methods: implications for clinical and epidemiological applications.
- Author
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Roberts WL, Sedrick R, Moulton L, Spencer A, and Rifai N
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Arteriosclerosis blood, Arteriosclerosis diagnosis, Autoanalysis, Blood Donors, Female, Humans, Immunoenzyme Techniques, Luminescent Measurements, Male, Middle Aged, Nephelometry and Turbidimetry, Prognosis, Reference Values, Sensitivity and Specificity, C-Reactive Protein analysis
- Abstract
Background: C-reactive protein (CRP) can provide prognostic information about the risk of developing atherosclerotic complications in apparently healthy patients. This new clinical application requires quantification of CRP concentrations below those traditionally measured in the clinical laboratory., Methods: The Dade Behring BN II, the Abbott IMx, the Diagnostic Products Corporation IMMULITE, and the Beckman Coulter IMMAGE are four automated analyzers with high-sensitivity CRP (hs-CRP) methods. We evaluated these assays for precision, linearity, and comparability with samples from 322 apparently healthy blood donors., Results: The imprecision (CV) of the BN II, IMx, IMMULITE, and IMMAGE methods was < or = 7.6%, < or = 12%, < or = 9.8%, and < or = 9.7% at 3.5 mg/L, respectively. The BN II, IMx, IMMULITE, and IMMAGE methods were linear down to < or = 0.30, < or = 0.32, < or = 0.85, and 2.26 mg/L, respectively. CRP concentrations demarcating each quartile in a healthy population were method dependent. The IMx method gave results comparable to the BN II method for values in the reference interval. The IMMULITE method had a positive intercept compared with the BN II method. The IMMAGE method demonstrated more scatter and a positive intercept compared with the BN II method, which may reflect the fact that it is a less sensitive assay., Conclusions: The four hs-CRP methods exhibited differences in results for a healthy population. Additional standardization efforts are required to ensure that hs-CRP results can be related to large-scale epidemiologic studies.
- Published
- 2000
34. Falsely low direct HDL-cholesterol results in a patient with dysbetalipoproteinemia.
- Author
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Roberts WL, Leary ET, Lambert TL, Moulton L, and Goestch JL
- Subjects
- False Negative Reactions, Humans, Male, Middle Aged, Cholesterol, HDL blood, Hyperlipoproteinemia Type III blood
- Published
- 2000
35. Falsely increased immunoassay measurements of total and unbound phenytoin in critically ill uremic patients receiving fosphenytoin.
- Author
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Roberts WL, De BK, Coleman JP, and Annesley TM
- Subjects
- Acute Kidney Injury drug therapy, Anticonvulsants therapeutic use, Chromatography, High Pressure Liquid, Critical Illness, Cross Reactions, False Positive Reactions, Female, Humans, Immunoassay, Kidney Failure, Chronic drug therapy, Male, Middle Aged, Phenytoin blood, Phenytoin therapeutic use, Acute Kidney Injury blood, Anticonvulsants blood, Kidney Failure, Chronic blood, Phenytoin analogs & derivatives
- Abstract
Background: Fosphenytoin, a phosphate ester prodrug of phenytoin, is metabolized to phenytoin in vivo. Phenytoin metabolites accumulate in renal insufficiency and cross-react in some phenytoin immunoassays. Our aim was to determine the accuracy of phenytoin immunoassays in renal patients treated with fosphenytoin., Methods: We measured phenytoin with HPLC and with the aca, ACS:180, TDx phenytoin II, Vitros, and AxSYM methods. Specimens were collected 2-120 h after fosphenytoin administration from 17 patients with renal insufficiency., Results: The AxSYM, TDx phenytoin II, ACS:180, and Vitros assays displayed falsely increased phenytoin results up to 20 times higher than the HPLC results. The aca Star results for these specimens were comparable to the HPLC results. Although fosphenytoin can cross-react with phenytoin immunoassays, no fosphenytoin was detected by a sensitive HPLC method in any sample that was tested for its presence., Conclusion: These results are consistent with the formation of one or more novel metabolites or adducts of fosphenytoin that accumulate in some critically ill patients with renal insufficiency and that display significant cross-reactivity with some, but not all, phenytoin immunoassay methods.
- Published
- 1999
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