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Multi-wavelength square pulses are generated in the dissipative soliton resonance (DSR) regime by a Yb-doped fiber laser (YDFL) with a long cavity configuration. The spectral filter effect provided by a passive fiber with low-stress birefringence facilitates the establishment of multi-wavelength operation. Through appropriate control of the cavity parameters, a multi-wavelength DSR pulse can be generated in single- and dual-waveband regions. When the multi-wavelength DSR works in the 1038 nm waveband, the pulse duration can broaden from 2 ns to 37.7 ns. The maximum intra-cavity pulse energy is 152.7 nJ. When the DSR works in the 1038 nm and 1080 nm wavebands, the pulse duration can be tuned from 2.3 ns to 10.5 ns with rising pump power. The emergence of the 1080 nm waveband is attributed to the stimulated Raman scattering (SRS) effect. Our work might help a deeper insight to be gained into DSR pulses in all-normal-dispersion YDFLs. [ABSTRACT FROM AUTHOR]