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Water infiltration and water permeation in one dimensional disjoint nanochannels is studied. With increasing the nanogap of one dimensional disjoint nanochannels, both number of water molecules in the disjoint nanochannel and water molecules transfer rate across the disjoint nanochannels decrease. The analysis of water-carbon interactions in the disjoint nanochannels helps to reveal the mechanism. These results may be beneficial for giving a new method for controlling water molecules.