1. HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design
- Author
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Christine A. Bricault, Karina Yusim, Michael S. Seaman, Hyejin Yoon, James Theiler, Elena E. Giorgi, Kshitij Wagh, Maxwell Theiler, Peter Hraber, Jennifer P. Macke, Edward F. Kreider, Gerald H. Learn, Beatrice H. Hahn, Johannes F. Scheid, James M. Kovacs, Jennifer L. Shields, Christy L. Lavine, Fadi Ghantous, Michael Rist, Madeleine G. Bayne, George H. Neubauer, Katherine McMahan, Hanqin Peng, Coraline Chéneau, Jennifer J. Jones, Jie Zeng, Christina Ochsenbauer, Joseph P. Nkolola, Kathryn E. Stephenson, Bing Chen, S. Gnanakaran, Mattia Bonsignori, LaTonya D. Williams, Barton F. Haynes, Nicole Doria-Rose, John R. Mascola, David C. Montefiori, Dan H. Barouch, and Bette Korber
- Subjects
Models, Molecular ,signature analysis ,Guinea Pigs ,V2-apex antibodies ,HIV Infections ,HIV Antibodies ,HIV Envelope Protein gp120 ,Microbiology ,Article ,Epitopes ,Inhibitory Concentration 50 ,Virology ,Animals ,Humans ,Amino Acid Sequence ,Vaccines ,broadly neutralizing antibodies ,Vaccination ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,Antibodies, Neutralizing ,Peptide Fragments ,Disease Models, Animal ,machine learning ,HEK293 Cells ,Antibody Formation ,Mutation ,vaccine design ,HIV-1 ,Parasitology ,Female ,Immunization ,hypervariable regions ,Protein Binding - Abstract
Summary Eliciting HIV-1-specific broadly neutralizing antibodies (bNAbs) remains a challenge for vaccine development, and the potential of passively delivered bNAbs for prophylaxis and therapeutics is being explored. We used neutralization data from four large virus panels to comprehensively map viral signatures associated with bNAb sensitivity, including amino acids, hypervariable region characteristics, and clade effects across four different classes of bNAbs. The bNAb signatures defined for the variable loop 2 (V2) epitope region of HIV-1 Env were then employed to inform immunogen design in a proof-of-concept exploration of signature-based epitope targeted (SET) vaccines. V2 bNAb signature-guided mutations were introduced into Env 459C to create a trivalent vaccine, and immunization of guinea pigs with V2-SET vaccines resulted in increased breadth of NAb responses compared with Env 459C alone. These data demonstrate that bNAb signatures can be utilized to engineer HIV-1 Env vaccine immunogens capable of eliciting antibody responses with greater neutralization breadth., Graphical Abstract, Highlights • HIV-1 bNAb sensitivity signatures from 4 large virus panels mapped across 4 Ab classes • Non-contact hypervariable region characteristics are critical for bNAb sensitivity • HIV-1 Env 459C used alone as a vaccine can elicit modest tier 2 NAbs in guinea pigs • V2 bNAb signature-guided modifications in 459C enhanced neutralization breadth, HIV-1 Env amino acid signatures associated with sensitivity to broadly neutralizing antibodies were systematically defined from large neutralization panels. V2 signatures were incorporated in a trivalent vaccine to enhance epitope exposure and to include common epitope variants, resulting in increased neutralization breadth against heterologous viruses in a guinea pig model.
- Published
- 2018