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Your search keyword '"Andersen, Kristian G."' showing total 17 results
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17 results on '"Andersen, Kristian G."'

1. Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Author

Crits-Christoph, Alexander, Levy, Joshua I., Pekar, Jonathan E., Goldstein, Stephen A., Singh, Reema, Hensel, Zach, Gangavarapu, Karthik, Rogers, Matthew B., Moshiri, Niema, Garry, Robert F., Holmes, Edward C., Koopmans, Marion P.G., Lemey, Philippe, Peacock, Thomas P., Popescu, Saskia, Rambaut, Andrew, Robertson, David L., Suchard, Marc A., Wertheim, Joel O., Rasmussen, Angela L., Andersen, Kristian G., Worobey, Michael, and Débarre, Florence

Published
2024
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2. The origins of SARS-CoV-2: A critical review

Author

Holmes, Edward C, Goldstein, Stephen A, Rasmussen, Angela L, Robertson, David L, Crits-Christoph, Alexander, Wertheim, Joel O, Anthony, Simon J, Barclay, Wendy S, Boni, Maciej F, Doherty, Peter C, Farrar, Jeremy, Geoghegan, Jemma L, Jiang, Xiaowei, Leibowitz, Julian L, Neil, Stuart JD, Skern, Tim, Weiss, Susan R, Worobey, Michael, Andersen, Kristian G, Garry, Robert F, and Rambaut, Andrew

Subjects
Biological Sciences, Bioinformatics and Computational Biology, Biomedical and Clinical Sciences, Pneumonia, Emerging Infectious Diseases, Biodefense, Vaccine Related, Infectious Diseases, Prevention, Pneumonia & Influenza, Lung, Good Health and Well Being, Animals, Biological Evolution, COVID-19, Humans, Laboratories, SARS-CoV-2, Zoonoses, evolution, origins, zoonosis, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences
Abstract

Since the first reports of a novel severe acute respiratory syndrome (SARS)-like coronavirus in December 2019 in Wuhan, China, there has been intense interest in understanding how severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emerged in the human population. Recent debate has coalesced around two competing ideas: a "laboratory escape" scenario and zoonotic emergence. Here, we critically review the current scientific evidence that may help clarify the origin of SARS-CoV-2.

Published
2021

3. Emergence of an early SARS-CoV-2 epidemic in the United States.

Author

Zeller, Mark, Gangavarapu, Karthik, Anderson, Catelyn, Smither, Allison R, Vanchiere, John A, Rose, Rebecca, Snyder, Daniel J, Dudas, Gytis, Watts, Alexander, Matteson, Nathaniel L, Robles-Sikisaka, Refugio, Marshall, Maximilian, Feehan, Amy K, Sabino-Santos, Gilberto, Bell-Kareem, Antoinette R, Hughes, Laura D, Alkuzweny, Manar, Snarski, Patricia, Garcia-Diaz, Julia, Scott, Rona S, Melnik, Lilia I, Klitting, Raphaëlle, McGraw, Michelle, Belda-Ferre, Pedro, DeHoff, Peter, Sathe, Shashank, Marotz, Clarisse, Grubaugh, Nathan D, Nolan, David J, Drouin, Arnaud C, Genemaras, Kaylynn J, Chao, Karissa, Topol, Sarah, Spencer, Emily, Nicholson, Laura, Aigner, Stefan, Yeo, Gene W, Farnaes, Lauge, Hobbs, Charlotte A, Laurent, Louise C, Knight, Rob, Hodcroft, Emma B, Khan, Kamran, Fusco, Dahlene N, Cooper, Vaughn S, Lemey, Phillipe, Gardner, Lauren, Lamers, Susanna L, Kamil, Jeremy P, Garry, Robert F, Suchard, Marc A, and Andersen, Kristian G

Subjects
Humans, Risk Factors, Disease Outbreaks, Phylogeny, Travel, United States, Louisiana, Texas, Databases as Topic, Epidemics, COVID-19, SARS-CoV-2, genomic epidemiology, mobility, phylogenetics, viral emergence, viral sequencing, Emerging Infectious Diseases, Biodefense, Prevention, Vaccine Related, Lung, Developmental Biology, Biological Sciences, Medical and Health Sciences
Abstract

The emergence of the COVID-19 epidemic in the United States (U.S.) went largely undetected due to inadequate testing. New Orleans experienced one of the earliest and fastest accelerating outbreaks, coinciding with Mardi Gras. To gain insight into the emergence of SARS-CoV-2 in the U.S. and how large-scale events accelerate transmission, we sequenced SARS-CoV-2 genomes during the first wave of the COVID-19 epidemic in Louisiana. We show that SARS-CoV-2 in Louisiana had limited diversity compared to other U.S. states and that one introduction of SARS-CoV-2 led to almost all of the early transmission in Louisiana. By analyzing mobility and genomic data, we show that SARS-CoV-2 was already present in New Orleans before Mardi Gras, and the festival dramatically accelerated transmission. Our study provides an understanding of how superspreading during large-scale events played a key role during the early outbreak in the U.S. and can greatly accelerate epidemics.

Published
2021

4. Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.

Author

Washington, Nicole L, Gangavarapu, Karthik, Zeller, Mark, Bolze, Alexandre, Cirulli, Elizabeth T, Schiabor Barrett, Kelly M, Larsen, Brendan B, Anderson, Catelyn, White, Simon, Cassens, Tyler, Jacobs, Sharoni, Levan, Geraint, Nguyen, Jason, Ramirez, Jimmy M, Rivera-Garcia, Charlotte, Sandoval, Efren, Wang, Xueqing, Wong, David, Spencer, Emily, Robles-Sikisaka, Refugio, Kurzban, Ezra, Hughes, Laura D, Deng, Xianding, Wang, Candace, Servellita, Venice, Valentine, Holly, De Hoff, Peter, Seaver, Phoebe, Sathe, Shashank, Gietzen, Kimberly, Sickler, Brad, Antico, Jay, Hoon, Kelly, Liu, Jingtao, Harding, Aaron, Bakhtar, Omid, Basler, Tracy, Austin, Brett, MacCannell, Duncan, Isaksson, Magnus, Febbo, Phillip G, Becker, David, Laurent, Marc, McDonald, Eric, Yeo, Gene W, Knight, Rob, Laurent, Louise C, de Feo, Eileen, Worobey, Michael, Chiu, Charles Y, Suchard, Marc A, Lu, James T, Lee, William, and Andersen, Kristian G

Subjects
Humans, Models, Biological, United States, Female, Male, COVID-19, SARS-CoV-2, 501Y.V1, B.1.1.7, VOC-202012/01, genomic epidemiology, variant of concern, Vaccine Related, Genetics, Human Genome, Biodefense, Prevention, Lung, Pneumonia, Good Health and Well Being, Biological Sciences, Medical and Health Sciences, Developmental Biology
Abstract

The highly transmissible B.1.1.7 variant of SARS-CoV-2, first identified in the United Kingdom, has gained a foothold across the world. Using S gene target failure (SGTF) and SARS-CoV-2 genomic sequencing, we investigated the prevalence and dynamics of this variant in the United States (US), tracking it back to its early emergence. We found that, while the fraction of B.1.1.7 varied by state, the variant increased at a logistic rate with a roughly weekly doubling rate and an increased transmission of 40%-50%. We revealed several independent introductions of B.1.1.7 into the US as early as late November 2020, with community transmission spreading it to most states within months. We show that the US is on a similar trajectory as other countries where B.1.1.7 became dominant, requiring immediate and decisive action to minimize COVID-19 morbidity and mortality.

Published
2021

5. Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics

Author

Matteson, Nathaniel L., Hassler, Gabriel W., Kurzban, Ezra, Schwab, Madison A., Perkins, Sarah A., Gangavarapu, Karthik, Levy, Joshua I., Parker, Edyth, Pride, David, Hakim, Abbas, De Hoff, Peter, Cheung, Willi, Castro-Martinez, Anelizze, Rivera, Andrea, Veder, Anthony, Rivera, Ariana, Wauer, Cassandra, Holmes, Jacqueline, Wilson, Jedediah, Ngo, Shayla N., Plascencia, Ashley, Lawrence, Elijah S., Smoot, Elizabeth W., Eisner, Emily R., Tsai, Rebecca, Chacón, Marisol, Baer, Nathan A., Seaver, Phoebe, Salido, Rodolfo A., Aigner, Stefan, Ngo, Toan T., Barber, Tom, Ostrander, Tyler, Fielding-Miller, Rebecca, Simmons, Elizabeth H., Zazueta, Oscar E., Serafin-Higuera, Idanya, Sanchez-Alavez, Manuel, Moreno-Camacho, Jose L., García-Gil, Abraham, Murphy Schafer, Ashleigh R., McDonald, Eric, Corrigan, Jeremy, Malone, John D., Stous, Sarah, Shah, Seema, Moshiri, Niema, Weiss, Alana, Anderson, Catelyn, Aceves, Christine M., Spencer, Emily G., Hufbauer, Emory C., Lee, Justin J., King, Alison J., Ramesh, Karthik S., Nguyen, Kelly N., Saucedo, Kieran, Robles-Sikisaka, Refugio, Fisch, Kathleen M., Gonias, Steven L., Birmingham, Amanda, McDonald, Daniel, Karthikeyan, Smruthi, Martin, Natasha K., Schooley, Robert T., Negrete, Agustin J., Reyna, Horacio J., Chavez, Jose R., Garcia, Maria L., Cornejo-Bravo, Jose M., Becker, David, Isaksson, Magnus, Washington, Nicole L., Lee, William, Garfein, Richard S., Luna-Ruiz Esparza, Marco A., Alcántar-Fernández, Jonathan, Henson, Benjamin, Jepsen, Kristen, Olivares-Flores, Beatriz, Barrera-Badillo, Gisela, Lopez-Martínez, Irma, Ramírez-González, José E., Flores-León, Rita, Kingsmore, Stephen F., Sanders, Alison, Pradenas, Allorah, White, Benjamin, Matthews, Gary, Hale, Matt, McLawhon, Ronald W., Reed, Sharon L., Winbush, Terri, McHardy, Ian H., Fielding, Russel A., Nicholson, Laura, Quigley, Michael M., Harding, Aaron, Mendoza, Art, Bakhtar, Omid, Browne, Sara H., Olivas Flores, Jocelyn, Rincon Rodríguez, Diana G., Gonzalez Ibarra, Martin, Robles Ibarra, Luis C., Arellano Vera, Betsy J., Gonzalez Garcia, Jonathan, Harvey-Vera, Alicia, Knight, Rob, Laurent, Louise C., Yeo, Gene W., Wertheim, Joel O., Ji, Xiang, Worobey, Michael, Suchard, Marc A., Andersen, Kristian G., Campos-Romero, Abraham, Wohl, Shirlee, and Zeller, Mark

Published
2023
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6. Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic

Author

Grubaugh, Nathan D., primary, Saraf, Sharada, additional, Gangavarapu, Karthik, additional, Watts, Alexander, additional, Tan, Amanda L., additional, Oidtman, Rachel J., additional, Ladner, Jason T., additional, Oliveira, Glenn, additional, Matteson, Nathaniel L., additional, Kraemer, Moritz U.G., additional, Vogels, Chantal B.F., additional, Hentoff, Aaron, additional, Bhatia, Deepit, additional, Stanek, Danielle, additional, Scott, Blake, additional, Landis, Vanessa, additional, Stryker, Ian, additional, Cone, Marshall R., additional, Kopp, Edgar W., additional, Cannons, Andrew C., additional, Heberlein-Larson, Lea, additional, White, Stephen, additional, Gillis, Leah D., additional, Ricciardi, Michael J., additional, Kwal, Jaclyn, additional, Lichtenberger, Paola K., additional, Magnani, Diogo M., additional, Watkins, David I., additional, Palacios, Gustavo, additional, Hamer, Davidson H., additional, Gardner, Lauren M., additional, Perkins, T. Alex, additional, Baele, Guy, additional, Khan, Kamran, additional, Morrison, Andrea, additional, Isern, Sharon, additional, Michael, Scott F., additional, and Andersen, Kristian G., additional

Published
2019
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7. Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection

Author

Saphire, Erica Ollmann, primary, Schendel, Sharon L., additional, Fusco, Marnie L., additional, Gangavarapu, Karthik, additional, Gunn, Bronwyn M., additional, Wec, Anna Z., additional, Halfmann, Peter J., additional, Brannan, Jennifer M., additional, Herbert, Andrew S., additional, Qiu, Xiangguo, additional, Wagh, Kshitij, additional, He, Shihua, additional, Giorgi, Elena E., additional, Theiler, James, additional, Pommert, Kathleen B.J., additional, Krause, Tyler B., additional, Turner, Hannah L., additional, Murin, Charles D., additional, Pallesen, Jesper, additional, Davidson, Edgar, additional, Ahmed, Rafi, additional, Aman, M. Javad, additional, Bukreyev, Alexander, additional, Burton, Dennis R., additional, Crowe, James E., additional, Davis, Carl W., additional, Georgiou, George, additional, Krammer, Florian, additional, Kyratsous, Christos A., additional, Lai, Jonathan R., additional, Nykiforuk, Cory, additional, Pauly, Michael H., additional, Rijal, Pramila, additional, Takada, Ayato, additional, Townsend, Alain R., additional, Volchkov, Viktor, additional, Walker, Laura M., additional, Wang, Cheng-I., additional, Zeitlin, Larry, additional, Doranz, Benjamin J., additional, Ward, Andrew B., additional, Korber, Bette, additional, Kobinger, Gary P., additional, Andersen, Kristian G., additional, Kawaoka, Yoshihiro, additional, Alter, Galit, additional, Chandran, Kartik, additional, and Dye, John M., additional

Published
2018
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8. Common PIEZO1 Allele in African Populations Causes RBC Dehydration and Attenuates Plasmodium Infection

Author

Ma, Shang, primary, Cahalan, Stuart, additional, LaMonte, Gregory, additional, Grubaugh, Nathan D., additional, Zeng, Weizheng, additional, Murthy, Swetha E., additional, Paytas, Emma, additional, Gamini, Ramya, additional, Lukacs, Viktor, additional, Whitwam, Tess, additional, Loud, Meaghan, additional, Lohia, Rakhee, additional, Berry, Laurence, additional, Khan, Shahid M., additional, Janse, Chris J., additional, Bandell, Michael, additional, Schmedt, Christian, additional, Wengelnik, Kai, additional, Su, Andrew I., additional, Honore, Eric, additional, Winzeler, Elizabeth A., additional, Andersen, Kristian G., additional, and Patapoutian, Ardem, additional

Published
2018
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11. High-Definition Medicine

Author

Torkamani, Ali, primary, Andersen, Kristian G., additional, Steinhubl, Steven R., additional, and Topol, Eric J., additional

Published
2017
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13. Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013–2016 Epidemic

Author

Diehl, William E., primary, Lin, Aaron E., additional, Grubaugh, Nathan D., additional, Carvalho, Luiz Max, additional, Kim, Kyusik, additional, Kyawe, Pyae Phyo, additional, McCauley, Sean M., additional, Donnard, Elisa, additional, Kucukural, Alper, additional, McDonel, Patrick, additional, Schaffner, Stephen F., additional, Garber, Manuel, additional, Rambaut, Andrew, additional, Andersen, Kristian G., additional, Sabeti, Pardis C., additional, and Luban, Jeremy, additional

Published
2016
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16. Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

Author

Andersen, Kristian G., primary, Shapiro, B. Jesse, additional, Matranga, Christian B., additional, Sealfon, Rachel, additional, Lin, Aaron E., additional, Moses, Lina M., additional, Folarin, Onikepe A., additional, Goba, Augustine, additional, Odia, Ikponmwonsa, additional, Ehiane, Philomena E., additional, Momoh, Mambu, additional, England, Eleina M., additional, Winnicki, Sarah, additional, Branco, Luis M., additional, Gire, Stephen K., additional, Phelan, Eric, additional, Tariyal, Ridhi, additional, Tewhey, Ryan, additional, Omoniwa, Omowunmi, additional, Fullah, Mohammed, additional, Fonnie, Richard, additional, Fonnie, Mbalu, additional, Kanneh, Lansana, additional, Jalloh, Simbirie, additional, Gbakie, Michael, additional, Saffa, Sidiki, additional, Karbo, Kandeh, additional, Gladden, Adrianne D., additional, Qu, James, additional, Stremlau, Matthew, additional, Nekoui, Mahan, additional, Finucane, Hilary K., additional, Tabrizi, Shervin, additional, Vitti, Joseph J., additional, Birren, Bruce, additional, Fitzgerald, Michael, additional, McCowan, Caryn, additional, Ireland, Andrea, additional, Berlin, Aaron M., additional, Bochicchio, James, additional, Tazon-Vega, Barbara, additional, Lennon, Niall J., additional, Ryan, Elizabeth M., additional, Bjornson, Zach, additional, Milner, Danny A., additional, Lukens, Amanda K., additional, Broodie, Nisha, additional, Rowland, Megan, additional, Heinrich, Megan, additional, Akdag, Marjan, additional, Schieffelin, John S., additional, Levy, Danielle, additional, Akpan, Henry, additional, Bausch, Daniel G., additional, Rubins, Kathleen, additional, McCormick, Joseph B., additional, Lander, Eric S., additional, Günther, Stephan, additional, Hensley, Lisa, additional, Okogbenin, Sylvanus, additional, Schaffner, Stephen F., additional, Okokhere, Peter O., additional, Khan, S. Humarr, additional, Grant, Donald S., additional, Akpede, George O., additional, Asogun, Danny A., additional, Gnirke, Andreas, additional, Levin, Joshua Z., additional, Happi, Christian T., additional, Garry, Robert F., additional, and Sabeti, Pardis C., additional

Published
2015
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17. Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

Author

Park, Daniel J., primary, Dudas, Gytis, additional, Wohl, Shirlee, additional, Goba, Augustine, additional, Whitmer, Shannon L.M., additional, Andersen, Kristian G., additional, Sealfon, Rachel S., additional, Ladner, Jason T., additional, Kugelman, Jeffrey R., additional, Matranga, Christian B., additional, Winnicki, Sarah M., additional, Qu, James, additional, Gire, Stephen K., additional, Gladden-Young, Adrianne, additional, Jalloh, Simbirie, additional, Nosamiefan, Dolo, additional, Yozwiak, Nathan L., additional, Moses, Lina M., additional, Jiang, Pan-Pan, additional, Lin, Aaron E., additional, Schaffner, Stephen F., additional, Bird, Brian, additional, Towner, Jonathan, additional, Mamoh, Mambu, additional, Gbakie, Michael, additional, Kanneh, Lansana, additional, Kargbo, David, additional, Massally, James L.B., additional, Kamara, Fatima K., additional, Konuwa, Edwin, additional, Sellu, Josephine, additional, Jalloh, Abdul A., additional, Mustapha, Ibrahim, additional, Foday, Momoh, additional, Yillah, Mohamed, additional, Erickson, Bobbie R., additional, Sealy, Tara, additional, Blau, Dianna, additional, Paddock, Christopher, additional, Brault, Aaron, additional, Amman, Brian, additional, Basile, Jane, additional, Bearden, Scott, additional, Belser, Jessica, additional, Bergeron, Eric, additional, Campbell, Shelley, additional, Chakrabarti, Ayan, additional, Dodd, Kimberly, additional, Flint, Mike, additional, Gibbons, Aridth, additional, Goodman, Christin, additional, Klena, John, additional, McMullan, Laura, additional, Morgan, Laura, additional, Russell, Brandy, additional, Salzer, Johanna, additional, Sanchez, Angela, additional, Wang, David, additional, Jungreis, Irwin, additional, Tomkins-Tinch, Christopher, additional, Kislyuk, Andrey, additional, Lin, Michael F., additional, Chapman, Sinead, additional, MacInnis, Bronwyn, additional, Matthews, Ashley, additional, Bochicchio, James, additional, Hensley, Lisa E., additional, Kuhn, Jens H., additional, Nusbaum, Chad, additional, Schieffelin, John S., additional, Birren, Bruce W., additional, Forget, Marc, additional, Nichol, Stuart T., additional, Palacios, Gustavo F., additional, Ndiaye, Daouda, additional, Happi, Christian, additional, Gevao, Sahr M., additional, Vandi, Mohamed A., additional, Kargbo, Brima, additional, Holmes, Edward C., additional, Bedford, Trevor, additional, Gnirke, Andreas, additional, Ströher, Ute, additional, Rambaut, Andrew, additional, Garry, Robert F., additional, and Sabeti, Pardis C., additional

Published
2015
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