1. A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
- Author
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Claudio Forcato, Claudio Bonghi, Rosanna Zimbello, Michela D'Angelo, Massimiliano Corso, Alessandro Vannozzi, Margherita Lucchin, Nicola Vitulo, Giorgio Valle, Davide Campagna, Andrea Telatin, Elisa Corteggiani Carpinelli, CRIBI (CRIBI), Universita degli Studi di Padova, Laboratoire de Physiologie et de Génétique Moléculaire des Plantes, Université libre de Bruxelles (ULB), and Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE)
- Subjects
RNA, Untranslated ,Organ Specificity -- genetics ,Plant Science ,Transcriptome ,Stress, Physiological -- genetics ,Gene Expression Regulation, Plant ,Databases, Genetic ,Protein Isoforms ,Vitis ,Alternative splicing ,RNAseq ,grapevine ,Genetics ,Regulation of gene expression ,Principal Component Analysis ,Untranslated ,[SDV.BBM.MN]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular Networks [q-bio.MN] ,Sciences bio-médicales et agricoles ,Adaptation, Physiological ,MicroRNAs -- genetics -- metabolism ,Organ Specificity ,RNA splicing ,Grapevine ,Databases, Nucleic Acid ,Research Article ,Gene isoform ,Adaptation, Physiological -- genetics ,Genotype ,Evolution ,Physiological ,Gene prediction ,Alternative Splicing -- genetics ,Vitis -- genetics ,[SDV.BID]Life Sciences [q-bio]/Biodiversity ,Biology ,Stress ,Genes, Plant ,Evolution, Molecular ,Databases ,Genetic ,Stress, Physiological ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Adaptation ,Gene ,Protein Isoforms -- genetics -- metabolism ,Nucleic Acid ,Arabidopsis Proteins ,RNA, Untranslated -- genetics -- metabolism ,Intron ,Arabidopsis Proteins -- genetics -- metabolism ,Molecular ,Plant ,Alternative Splicing ,MicroRNAs ,[SDV.BV.AP]Life Sciences [q-bio]/Vegetal Biology/Plant breeding ,Gene Expression Regulation ,Genes ,RNA - Abstract
Alternative splicing (AS) significantly enhances transcriptome complexity. It is differentially regulated in a wide variety of cell types and plays a role in several cellular processes. Here we describe a detailed survey of alternative splicing in grape based on 124 SOLiD RNAseq analyses from different tissues, stress conditions and genotypes., info:eu-repo/semantics/published
- Published
- 2013