4 results on '"Yi, Yuting"'
Search Results
2. Targeted next-generation sequencing identification of mutations in patients with disorders of sex development
- Author
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Ziying Yang, Huamei Hu, Li-ying Zhou, Xin Yi, Hong Yao, Yanling Dong, Jiucheng Liu, Zhiqing Liang, Asan, Changxin Gao, Ming Zhang, and Yi Yuting
- Subjects
0301 basic medicine ,Male ,China ,Disorders of sex development ,Novel mutation ,030209 endocrinology & metabolism ,Biology ,medicine.disease_cause ,Polymorphism, Single Nucleotide ,DNA sequencing ,03 medical and health sciences ,0302 clinical medicine ,Asian People ,Gene duplication ,Genetics ,medicine ,Humans ,Genetics(clinical) ,Genetic Testing ,Targeted next-generation sequencing ,Indel ,Genetics (clinical) ,Genetic testing ,Mutation ,Sex Chromosomes ,medicine.diagnostic_test ,Genetic heterogeneity ,Sexual Development ,High-Throughput Nucleotide Sequencing ,Reproducibility of Results ,Sequence Analysis, DNA ,Human genetics ,030104 developmental biology ,Testis determining factor ,Female ,Sequence Alignment ,Research Article - Abstract
Background The identification of causative mutations is important for treatment decisions and genetic counseling of patients with disorders of sex development (DSD). Here, we designed a new assay based on targeted next-generation sequencing (NGS) to diagnose these genetically heterogeneous disorders. Methods All coding regions and flanking sequences of 219 genes implicated in DSD were designed to be included on a panel. A total of 45 samples were used for sex chromosome dosage validation by targeted sequencing using the NGS platform. Among these, 21 samples were processed to find the causative mutation. Results The sex chromosome dosages of all 45 samples in this assay were concordant with their corresponding karyotyping results. Among the 21 DSD patients, a total of 11 mutations in SRY, NR0B1, AR, CYP17A1, GK, CHD7, and SRD5A2 were identified, including five single nucleotide variants, three InDels, one in-frame duplication, one SRY-positive 46,XX, and one gross duplication with an estimated size of more than 427,038 bp containing NR0B1 and GK. We also identified six novel mutations: c.230_231insA in SRY, c.7389delA in CHD7, c.273C>G in NR0B1, and c.2158G>A, c.1825A>G, and c.2057_2065dupTGTGTGCTG in AR. Conclusions Our assay was able to make a genetic diagnosis for eight DSD patients (38.1 %), and identified variants of uncertain clinical significance in the other three cases (14.3 %). Targeted NGS is therefore a comprehensive and efficient method to diagnose DSD. This work also expands the pathogenic mutation spectrum of DSD. Electronic supplementary material The online version of this article (doi:10.1186/s12881-016-0286-2) contains supplementary material, which is available to authorized users.
- Published
- 2016
3. A novel germline <italic>ARMC5</italic> mutation in a patient with bilateral macronodular adrenal hyperplasia: a case report.
- Author
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Liu, Qiuli, Tong, Dali, Xu, Jing, Yang, Xingxia, Yi, Yuting, Zhang, Dianzheng, Wang, Luofu, Zhang, Jun, Zhang, Yao, Li, Yaoming, Chang, Lianpeng, Chen, Rongrong, Guan, Yanfang, Yi, Xin, and Jiang, Jun
- Subjects
ADRENOGENITAL syndrome ,HYPERPLASIA ,CUSHING'S syndrome ,GERM cells ,SOMATIC cells ,TUMOR suppressor genes ,ADRENOCORTICOTROPIC hormone ,HISTOPATHOLOGY ,DISEASE risk factors - Abstract
Background: Bilateral macronodular adrenal hyperplasia (BMAH) is a rare cause of Cushing’s syndrome (CS). BMAH is predominantly believed to be caused by two mutations, a germline and somatic one, respectively, as described in the two-hit hypothesis. In many familial cases of BMAH, mutations in armadillo repeat containing 5 (
ARMC5 ), a putative tumor suppressor gene, are thought to induce the disorder. The objective of this study was to report a case in which the patient presented with BMAH induced by a novel heterozygous germlineARMC5 mutation (c. 517C > T, p. Arg173*) alone rather than a two-hit mutation. Case presentation: A 51-year-old woman was identified with masses in the bilateral adrenals. Serum cortisol levels were increased significantly both in the morning (08:00 AM) and late at night (24:00 AM), while plasma adrenocorticotropic hormone was normal. The patient underwent a left adrenalectomy and histopathology substantiated the BMAH diagnosis. WES of the germline DNA discovered a novel heterozygous germlineARMC5 mutation (c. 517C > T, p. Arg173*) and in silico analysis predicted that the mutation significantly impaired protein function, resulting in inactivated ARMC5. Subsequently, WES of the tumor specimen identified 79 somatic single nucleotide polymorphisms (SNPs)/insertion-deletion (indel) mutations, including 32 missense/nonsense/splice/stop-loss mutations. None of these mutations were CS-related. Conclusions: A novel germlineARMC5 mutation (c. 517C > T, p. Arg173*) was identified that induced BMAH alone without a second mutation. ARMC5 sequencing may improve the identification of clinical forms of BMAH and allow earlier diagnosis of this disease. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
4. Targeted next-generation sequencing identification of mutations in patients with disorders of sex development.
- Author
-
Dong Y, Yi Y, Yao H, Yang Z, Hu H, Liu J, Gao C, Zhang M, Zhou L, Asan, Yi X, and Liang Z
- Subjects
- Asian People genetics, China, Disorders of Sex Development diagnosis, Female, Genetic Testing, Humans, Male, Polymorphism, Single Nucleotide, Reproducibility of Results, Sequence Alignment, Sequence Analysis, DNA methods, Sex Chromosomes genetics, Sexual Development genetics, Disorders of Sex Development genetics, High-Throughput Nucleotide Sequencing methods, Mutation
- Abstract
Background: The identification of causative mutations is important for treatment decisions and genetic counseling of patients with disorders of sex development (DSD). Here, we designed a new assay based on targeted next-generation sequencing (NGS) to diagnose these genetically heterogeneous disorders., Methods: All coding regions and flanking sequences of 219 genes implicated in DSD were designed to be included on a panel. A total of 45 samples were used for sex chromosome dosage validation by targeted sequencing using the NGS platform. Among these, 21 samples were processed to find the causative mutation., Results: The sex chromosome dosages of all 45 samples in this assay were concordant with their corresponding karyotyping results. Among the 21 DSD patients, a total of 11 mutations in SRY, NR0B1, AR, CYP17A1, GK, CHD7, and SRD5A2 were identified, including five single nucleotide variants, three InDels, one in-frame duplication, one SRY-positive 46,XX, and one gross duplication with an estimated size of more than 427,038 bp containing NR0B1 and GK. We also identified six novel mutations: c.230_231insA in SRY, c.7389delA in CHD7, c.273C>G in NR0B1, and c.2158G>A, c.1825A>G, and c.2057_2065dupTGTGTGCTG in AR., Conclusions: Our assay was able to make a genetic diagnosis for eight DSD patients (38.1%), and identified variants of uncertain clinical significance in the other three cases (14.3%). Targeted NGS is therefore a comprehensive and efficient method to diagnose DSD. This work also expands the pathogenic mutation spectrum of DSD.
- Published
- 2016
- Full Text
- View/download PDF
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