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Background: Amidst the escalating loss of global biodiversity, freshwater mussels (family Unionidae) have become one of the most imperiled animal groups. Acquiring more biological and phylogenetic information on understudied taxa constitutes a pivotal aspect of conservation biology. Consequently, a comprehensive examination was conducted on Koreosolenaia, Parvasolenaia, and Sinosolenaia from China encompassing morphology, anatomy, distribution, and molecular systematics to provide theoretical support for future species endangerment assessments and biodiversity conservation. Results: The shell characteristics of Koreosolenaia, Parvasolenaia, and Sinosolenaia were clearly distinct, and the soft-body morphology could also be easily distinguished from each other. The papillae of the incurrent aperture of Sinosolenaia iridinea, Sinosolenaia recognita, and Sinosolenaia oleivora, which were previously described as difficult, exhibited significant variations that could be utilized for species diagnosis. Furthermore, both incurrent and excurrent apertures of the Sinosolenaia species had small cysts on their dorsal surfaces which may be unique to this particular group. Comparative analysis of six mitochondrial genomes (Parvasolenaia rivularis, Koreosolenaia sitgyensis, Sinosolenaia iridinea, Sinosolenaia recognita, Sinosolenaia carinata, and Sinosolenaia oleivora) revealed a completely consistent gene arrangement pattern. Additionally, there was a high consistency in nucleotide base content and skewness, amino acid usage, and relative synonymous codon usage among the six complete mitochondrial genomes. Mitochondrial phylogenomics of these genomes with additional taxa within Gonideinae robustly supported the generic relationships as follows: (Inversidens + ((Microcondylaea + Sinosolenaia) + (Parvasolenaia + (Koreosolenaia + (Ptychorhynchus + (Postolata + Cosmopseudodon)))))). Conclusions: The present study provided significant data on the shell morphology and soft-body anatomy of Koreosolenaia, Parvasolenaia, and Sinosolenaia, thereby clarifying the diagnostic characteristics for these challenging taxa. Additionally, we established a robust phylogenetic framework at both the generic and species levels based on mitochondrial genomics. [ABSTRACT FROM AUTHOR]