1. Design and synthesis of a possible mimic of a thrombin-binding DNA aptamer
- Author
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Jeroen W.J. Schipperijn, Jacques H. van Boom, Gijs A. van der Marel, Rogier C. Buijsman, Esther Kuyl-Yeheskiely, and Constant A. A. van Boeckel
- Subjects
Allylic rearrangement ,Molecular model ,Stereochemistry ,Aptamer ,Organic Chemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Biochemistry ,Chemical synthesis ,chemistry.chemical_compound ,Deoxyribonucleotide ,chemistry ,Drug Discovery ,Phosphodiester bond ,Molecular Medicine ,Thymidine ,Molecular Biology ,DNA - Abstract
A synthesis is presented of the cyclic trimeric d-oligonucleotide 3′-isopropylphosphate I, comprising one formacetal and two (3′ → 5′)-internucleosidic phosphodiester bonds. The ester linkages connect d-guanosine with the 3′ and 5′ ends of thymidine and 5-hydroxymethyl-2′-deoxyuridine-3′-isopropylphosphate (HMDUpiPr), respectively. The 5′-end of the thymidine unit is anchored via the formacetal bond to the allylic hydroxyl group of HMDUpiPr. The cyclic arrangement of the three d-nucleosides in I mimics, as based on molecular modeling, the key structural features of the conformationally constrained T7pG8pT9p-domain of the thrombin-binding DNA aptamer d(G1G2T3T4G5G6 T 7 G 8 T 9 G10G11T12T13G14G15). Biological evaluation showed that compound I did not exhibit anti-thrombin activity.
- Published
- 1997
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