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Introduction: Fungi, especially some species of penicillium and Aspergillus are the main cause of dairy products contamination. Because of producing mycotoxins, they may jeopardize public health and food safety. This research aims at isolation, identification, counting of saprophytic fungi in different kinds of Isfahan dairy products and study of the frequency distribution of mould contamination (more than acceptable) of dairy samples compared to permitted Iranian national standard level) 2406) in 2012. Materials and methods: In this study, 200 samples from different types of pasteurized dairy products were collected from different parts of Isfahan city, including 70 samples of cheese, 60 samples of doogh, 40 samples of yoghurt, 20 samples of kashk (whey) and 10 samples of cream which were investigated based on the presence of saprophytic fungi point of view. Isolation, identification and mould count were conducted using pure plate and slide culture methods and the results were compared according to National Iranian Standard and analyzed using SPSS, version 16 and X2 statistical significance. Results: Totally 117 (58/5%) samples were satisfactory, 50 (25%) samples were acceptable and 33 (16/5%) were non-acceptable. The most mould contamination (more than acceptable) was related to cheese, cream, kashk, doogh and yoghurt, respectively. Some fungi from the genera of Penicillium, Aspergillus, Cladosporium and Acremonium were detected. The statistical analysis didn’t show significant difference between mould contamination rate and kind of dairy product (Pvalue