1. Environment- and sequence-dependent modulation of the double-stranded to single-stranded conformational transition of gramicidin A in membranes.
- Author
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Salom D, Pérez-Payá E, Pascal J, and Abad C
- Subjects
- Amino Acid Sequence, Amino Acid Substitution, Cholestenes chemistry, Chromatography, High Pressure Liquid, Circular Dichroism, Dimerization, Enterococcus faecium drug effects, Enterococcus faecium growth & development, Fatty Acids, Unsaturated chemistry, Gramicidin pharmacology, Microbial Sensitivity Tests, Molecular Sequence Data, Phenylalanine chemistry, Phenylalanine metabolism, Phosphatidylcholines chemistry, Spectrometry, Fluorescence, Tryptophan chemistry, Tryptophan metabolism, Gramicidin chemistry, Gramicidin metabolism, Lipid Bilayers chemistry, Lipid Bilayers metabolism, Protein Conformation
- Abstract
The role of the membrane lipid composition and the individual Trp residues in the conformational rearrangement of gramicidin A along the folding pathway to its channel conformation has been examined in phospholipid bilayers by means of previously described size-exclusion high-performance liquid chromatography HPLC-based strategy (Bañó et al. (1991) Biochemistry 30, 886). It has been demonstrated that the chemical composition of the membrane influences the transition rate of the peptide rearrangement from double-stranded dimers to beta-helical monomers. The chemical modification of Trp residues, or its substitution by the more hydrophobic residues phenylalanine or naphthylalanine, stabilized the double-stranded dimer conformation in model membranes. This effect was more notable as the number of Trp-substituted residues increased (tetra > tri > di > mono), and it was also influenced by the specific position of the substituted amino acid residue in the sequence, in the order Trp-9 approximately Trp-13 > Trp-11 > Trp-15. Moreover, it was verified that nearly a full contingent of indoles (Trp-13, -11, and -9) is necessary to induce a quantitative conversion from double-stranded dimers to single-stranded monomers, although Trp-9 and Trp-13 seemed to be key residues for the stabilization of the beta-helical monomeric conformation of gramicidin A. The conformation adopted for monomeric Trp --> Phe substitution analogues in lipid vesicles resulted in CD spectra similar to the typical single-stranded beta6.3-helical conformation of gramicidin A. However, the Trp --> Phe substitution analogues showed decreased antibiotic activity as the number of Trp decreased.
- Published
- 1998
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