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2. Determination of ionization constants by paper electrophoresis
- Author
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M E Tate
- Subjects
Adenosine ,Analytical chemistry ,Buffers ,Biochemistry ,Oxalate ,Ion ,chemistry.chemical_compound ,Bacteriocins ,Deoxyadenosine ,Adenine nucleotide ,Ionization ,medicine ,Glycerol ,Electrophoresis, Paper ,Molecular Biology ,Deoxyadenosines ,Adenine Nucleotides ,Chemistry ,Adenine ,Cell Biology ,Hydrogen-Ion Concentration ,Models, Chemical ,Research Article ,medicine.drug ,Dimensionless quantity - Abstract
Dimensionless apparent ionization constants of charged low-molecular-weight species may be obtained from paper-electrophoretic data at 20-25 degrees C with buffers (I0.1-0.5) of measured pH (1.5-12.5) containing oxalate ions. Relative mobilities rather than absolute mobilities were measured by using glycerol and m-nitrobenzenesulphonate respectively as standards of zero and unit mobility. Application of the procedure to ionizations of adenine, adenosine, 2′-deoxyadenosine, 3′-deoxyadenosine, 3′:5′-cyclic AMP, ADP, ADP-glucose-agrocin 84 and ATP is described.
- Published
- 1981
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3. The separation of oligonucleotides of baker's-yeast valine transfer ribonucleic acid 2b by high-voltage electrophoresis on DEAE-paper and by thin-layer chromatography
- Author
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J Barciszewski, V D Axel'rod, T.V. Kutateladze, and V.G. Gorbulev
- Subjects
Free-flow electrophoresis ,Oligoribonucleotides ,Chromatography ,Oligonucleotides ,Valine ,Saccharomyces cerevisiae ,Cell Biology ,Gel electrophoresis of proteins ,Biochemistry ,Cellulose acetate ,Yeast ,Thin-layer chromatography ,chemistry.chemical_compound ,Electrophoresis ,RNA, Transfer ,chemistry ,Electrophoresis, Paper ,Chromatography, Thin Layer ,Cellulose ,Molecular Biology ,Research Article - Abstract
A modified procedure for the separation of oligoribonucleotides is described that is based on the combination of t.l.c. on cellulose and electrophoresis on DEAE-paper at 4000 V on a cooling plate. The technique is relatively rapid and allows the analysis of larger quantities than is possible by electrophoresis on cellulose acetate.
- Published
- 1977
- Full Text
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4. Plant cell walls to ethanol
- Author
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Kurt Wagschal, Ronald E. Hector, Michael J. Bowman, Bruce S. Dien, Jeffrey A. Mertens, Jay D. Braker, Douglas B. Jordan, and Charles C. Lee
- Subjects
Biomass ,Saccharomyces cerevisiae ,Cellulase ,Lignin ,Biochemistry ,chemistry.chemical_compound ,Cell Wall ,Polysaccharides ,Ethanol fuel ,Cellulose ,Bioprocess ,Molecular Biology ,Ethanol ,biology ,business.industry ,Cell Biology ,Plants ,Pulp and paper industry ,Recombinant Proteins ,Enzymes ,Biotechnology ,chemistry ,Biofuel ,Biofuels ,Fermentation ,biology.protein ,Pectins ,business - Abstract
Conversion of plant cell walls to ethanol constitutes second generation bioethanol production. The process consists of several steps: biomass selection/genetic modification, physiochemical pretreatment, enzymatic saccharification, fermentation and separation. Ultimately, it is desirable to combine as many of the biochemical steps as possible in a single organism to achieve CBP (consolidated bioprocessing). A commercially ready CBP organism is currently unreported. Production of second generation bioethanol is hindered by economics, particularly in the cost of pretreatment (including waste management and solvent recovery), the cost of saccharification enzymes (particularly exocellulases and endocellulases displaying kcat ~1 s−1 on crystalline cellulose), and the inefficiency of co-fermentation of 5- and 6-carbon monosaccharides (owing in part to redox cofactor imbalances in Saccharomyces cerevisiae).
- Published
- 2012
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5. Urobilinogen-i is a major derivative of bilirubin in bile of homozygous Gunn rats
- Author
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J Fevery and P Kotal
- Subjects
Male ,Vitamin ,Bilirubin ,Rats, Gunn ,digestive system ,Biochemistry ,chemistry.chemical_compound ,medicine ,Animals ,Bile ,Molecular Biology ,Chromatography, High Pressure Liquid ,Chromatography ,Urobilinogen ,Hepatobiliary disease ,Rats, Inbred Strains ,Cell Biology ,Neomycin ,Metabolism ,Rats ,Paper chromatography ,Spectrometry, Fluorescence ,chemistry ,Glucosyltransferases ,Spectrophotometry ,Chromatography, Thin Layer ,Research Article ,Bilirubin-glucuronoside glucuronosyltransferase ,medicine.drug - Abstract
Gunn rats lack bilirubin UDP-glycosyltransferases, but diazo-negative derivatives of bilirubin have been described in their bile. In order to investigate this alternative disposal of bilirubin, crude bile samples from Gunn and Wistar rats were directly analysed by h.p.l.c. Besides bilirubin (in Gunn rats) or its glycosides (in Wistar rats), two major compounds were detected. A yellow one corresponded to the previously documented vitamin B-2 and was equally prominent in Gunn rats or Wistar-rat bile. The other compound was colourless, but on standing in contact with air it was spontaneously oxidized to a pinkish-yellow pigment. It was far more prominent in Gunn-rat bile. Analysis of bile obtained after intravenous injection of [14C]bilirubin to Gunn rats demonstrated that this compound was highly labelled. Freezing and thawing of the bile resulted in the formation of a series of diazo-negative derivatives, demonstrating that the original compound was quite labile. Spectral (adsorption and fluorescent) and chromatographic (h.p.l.c., t.l.c. and paper chromatography) analysis of the oxidized form of the labelled compound allowed its identification as urobilin-i. The colourless compound secreted in bile was urobilinogen-i. Administration of neomycin and bacitracin to Gunn rats or gut resection suppressed the biliary excretion of urobilinogen and thus confirmed its intestinal origin. Urobilinogen seems thus to represent the major bilirubin derivative present in Gunn-rat bile. Its breakdown products might represent the so-far-unidentified diazo-negative polar bilirubin derivatives. Since only a small amount of bilirubin is present in Gunn-rat bile, the urobilinogen formed in the intestinal lumen seems to be derived from bilirubin reaching the gut via routes other than the biliary one.
- Published
- 1990
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6. Reduction in the level of intracellular myo-inositol in cultured soybean (Glycine max) cells inhibits cell division
- Author
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David E. Hanke and M Biffen
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Cell division ,Chromatography, Paper ,Cell growth ,Deoxyglucose ,Cell Biology ,Biology ,Biochemistry ,carbohydrates (lipids) ,Kinetics ,chemistry.chemical_compound ,chemistry ,Callus ,Glycine ,lipids (amino acids, peptides, and proteins) ,Inositol ,Soybeans ,Viability assay ,Molecular Biology ,Cell Division ,Cells, Cultured ,Intracellular ,Research Article - Abstract
Although myo-inositol is included in media for the successful growth of plant tissues, the actual requirement of most tissues, including soybean (Glycine max) callus in suspension culture, for myo-inositol has not been demonstrated. We have made use of deoxyglucose to reduce intracellular levels of myo-inositol. Deoxyglucose is phosphorylated to deoxyglucose 6-phosphate, which inhibits L-myo-inositol 1-phosphate synthase, an important enzyme in the synthesis of myo-inositol. Addition of deoxyglucose to the medium resulted in a decrease in the intracellular level of myo-inositol that corresponded with a decrease in cell division. Cell viability was not affected. When myo-inositol was added to cells along with deoxyglucose, cell division was restored, as were intracellular levels of myo-inositol. Addition of myo-inositol had no affect on the uptake or metabolism of deoxyglucose. From these results we propose that myo-inositol has a role in maintaining cell division in soybean callus tissue in suspension culture.
- Published
- 1990
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7. The tryptic peptides of rabbit muscle triose phosphate isomerase
- Author
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Stephen G. Waley and P. H. Corran
- Subjects
Chromatography, Paper ,Size-exclusion chromatography ,Fractionation ,Aminopeptidases ,Biochemistry ,Triosephosphate isomerase ,Species Specificity ,Animals ,Trypsin ,Amino Acid Sequence ,Amino Acids ,Deamidation ,Molecular Biology ,Dansyl Compounds ,chemistry.chemical_classification ,Chromatography ,Muscles ,Proteins ,Genetic Variation ,Cell Biology ,Pepsin A ,Peptide Fragments ,Paper chromatography ,Enzyme ,chemistry ,Sephadex ,Chromatography, Gel ,Rabbits ,Carbohydrate Epimerases ,Digestion ,Chickens ,Triose-Phosphate Isomerase - Abstract
1. The peptides obtained by tryptic digestion of S-[14C]carboxymethylated rabbit muscle triose phosphate isomerase have been studied. 2. The first step in the fractionation of the tryptic digest was gel filtration on coupled columns of Sephadex G-25 and G-50. Further fractionation was carried out by paper electrophoresis and paper chromatography. 3. The digest contained 26 peptides and three free amino acids. The sizes of the peptides ranged from two to 29 residues. 4. The sequences of the peptides have been determined. 5. The length of the polypeptide chains is about 250 amino acid residues. 6. The variant sequences encountered were due to partial deamidation; this may be one of the reasons for multiple forms of the enzyme. 7. The chicken and rabbit enzymes are compared. 8. Detailed evidence for the sequences of the tryptic peptides has been deposited as Supplementary Publication SUP 50024 at the British Library, Lending Division (formerly the National Lending Library for Science and Technology), Boston Spa, Yorks. LS23 7BQ, U.K., from whom copies can be obtained on the terms given in Biochem. J. (1973) 131, 5.
- Published
- 1974
- Full Text
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8. Purification and properties of the cellulases from the thermophilic fungus Thermoascus aurantiacus
- Author
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A L Cole, M G Shepherd, and C C Tong
- Subjects
Sodium ,Carbohydrates ,chemistry.chemical_element ,Cellulase ,Biochemistry ,Ascomycota ,Drug Stability ,Molecular Biology ,Glucan ,chemistry.chemical_classification ,Chromatography ,biology ,Filter paper ,beta-Glucosidase ,Thermophile ,Temperature ,Cell Biology ,Hydrogen-Ion Concentration ,Carbohydrate ,Yeast ,Isoenzymes ,Molecular Weight ,Kinetics ,Enzyme ,chemistry ,biology.protein ,Electrophoresis, Polyacrylamide Gel ,Glucosidases ,Research Article - Abstract
Three cellulases and a beta-glucosidase were purified from the culture filtrate of the thermophilic fungus Thermoascus aurantiacus. The isolated enzymes were all homogeneous on polyacrylamide-disc-gel electrophoresis. Data from chromatography on Bio-Gel P-60 and sodium dodecyl sulphate/polyacrylamide-gel electrophoresis indicated mol.wts. of 87000 (beta-glucosidase), 78000 (cellulase I), 49000 (cellulase II) and 34000 (cellulase III); the carbohydrate contents of the enzymes were 33.0, 5.5, 2.6 and 1.8% (w/w) respectively. Although the three purified cellulases were active towards filter paper, only cellulases I and III were active towards CM(carboxymethyl)-cellulose. Cellulase I was also active towards yeast glucan. The Km and catalytic-centre-activity values for the enzymes were as follows; 0.52 mumol/ml and 6.5 × 10(4) for beta-glucosidase on p-nitrophenyl beta-D-glucoside, 3.9 mg/ml and 6.3 for cellulase I on CM-cellulose, 1.2 mg/ml and 1.1 for cellulase I on yeast glucan, 35.5 mg/ml and 0.34 for cellulase II on filter paper, and 1.9 mg/ml and 33 for cellulase III on CM-cellulose.
- Published
- 1980
- Full Text
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9. Comparative study on glycosaminoglycans synthesized in peripheral and peritoneal polymorphonuclear leucocytes from guinea pigs
- Author
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Y Ohhashi, Y Mori, and F Hasumi
- Subjects
Male ,Chromatography, Paper ,Neutrophils ,Guinea Pigs ,In Vitro Techniques ,Biochemistry ,Glycosaminoglycan ,chemistry.chemical_compound ,Sulfation ,Glucosamine ,Animals ,Ascitic Fluid ,Chondroitin ,Centrifugation ,Molecular Biology ,Glycosaminoglycans ,chemistry.chemical_classification ,Chromatography ,Sulfates ,Cell Biology ,Molecular biology ,Chondroitinases and Chondroitin Lyases ,carbohydrates (lipids) ,Kinetics ,Paper chromatography ,Enzyme ,chemistry ,Chromatography, Gel ,Sulfatases ,Lysosomes ,Digestion ,Research Article - Abstract
Glycosaminoglycans synthesized in polymorphonuclear (PMN) leucocytes isolated from blood (peripheral PMN leucocytes) and in those induced intraperitoneally by the injection of caseinate (peritoneal PMN leucocytes) were compared. Both peripheral and peritoneal PMN leucocytes were incubated in medium containing [35S]sulphate and [3H]glucosamine. Each sample obtained after incubation was separated into cell, cell-surface and medium fractions by trypsin digestion and centrifugation. The glycosaminoglycans secreted from peripheral and peritoneal PMN leucocytes were decreased in size by alkali treatment, indicating that they existed in the form of proteoglycans. Descending paper chromatography of the unsaturated disaccharides obtained by the digestion of glycosaminoglycans with chondroitinase AC and chondroitinase ABC identified the labelled glycosaminoglycans of both the cell and the medium fractions in peripheral PMN leucocytes as 55-58% chondroitin 4-sulphate, 16-19% chondroitin 6-sulphate, 16-19% dermatan sulphate and 6-8% heparan sulphate. Oversulphated chondroitin sulphate and oversulphated dermatan sulphate were found only in the medium fraction. In peritoneal PMN leucocytes there is a difference in the composition of glycosaminoglycans between the cell and the medium fractions; the cell fraction was composed of 60% chondroitin 4-sulphate, 5.5% chondroitin 6-sulphate, 16.8% dermatan sulphate and 13.9% heparan sulphate, whereas the medium fraction consisted of 24.5% chondroitin 4-sulphate, 28.2% chondroitin 6-sulphate, 33.7% dermatan sulphate and 10% heparan sulphate. Oversulphated chondroitin sulphate and oversulphated dermatan sulphate were found in the cell, cell-surface and medium fractions. On the basis of enzymic assays with chondro-4-sulphatase and chondro-6-sulphatase, the positions of sulphation in the disulphated disaccharides were identified as 4- and 6-positions of N-acetylgalactosamine. Most of the 35S-labelled glycosaminoglycans synthesized in peripheral PMN leucocytes were retained within cells, whereas those in peritoneal PMN leucocytes were secreted into the culture medium. Moreover, the amount of glycosaminoglycans in peritoneal PMN leucocytes was significantly less than that in peripheral PMN leucocytes. Assay of lysosomal enzymes showed that these activities in peritoneal PMN leucocytes were 2-fold higher than those in peripheral PMN leucocytes.
- Published
- 1984
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10. A glucuronyltransferase involved in glucuronoxylan synthesis in pea (Pisum sativum) epicotyls
- Author
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Keith W. Waldron and Christopher T. Brett
- Subjects
Cations, Divalent ,Chromatography, Paper ,Polysaccharide ,Biochemistry ,Pisum ,chemistry.chemical_compound ,Hydrolysis ,Sativum ,Polysaccharides ,Glucuronoxylan ,Freezing ,Glucuronosyltransferase ,Molecular Biology ,chemistry.chemical_classification ,Plants, Medicinal ,Chromatography ,biology ,food and beverages ,Fabaceae ,Cell Biology ,Plants ,Glucuronic acid ,biology.organism_classification ,Paper chromatography ,Uridine Diphosphate Xylose ,Enzyme ,chemistry ,Uridine Diphosphate Glucuronic Acid ,Xylans ,Research Article - Abstract
A particulate enzyme preparation made from epicotyls of 1-week-old etiolated pea (Pisum sativum) seedlings was shown to incorporate glucuronic acid from UDP-D-[U-14C]glucuronic acid into a hemicellulosic polysaccharide. Optimum conditions for the incorporation include the presence of Mn2+ ions at between 4 and 10 mmol/litre and a pH between 5 and 6. UDP-D-xylose at 1 mmol/litre allows incorporation to continue for at least 8 h. In its absence, the reaction stops within 30 min. Analysis of the product by partial and total acid hydrolysis, followed by paper chromatography or electrophoresis, indicates that the polysaccharide produced is a glucuronoxylan.
- Published
- 1983
- Full Text
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11. Studies on the subunit structure and amino acid sequence of triose phosphate isomerase from chicken breast muscle
- Author
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R. E. Offord, J. D. Priddle, Anna J. Furth, and J. D. Milman
- Subjects
Chromatography, Paper ,Macromolecular Substances ,Protein subunit ,Thermolysin ,Iodoacetates ,Carboxypeptidases ,Biochemistry ,Chromatography, DEAE-Cellulose ,Homology (biology) ,Triosephosphate isomerase ,Hydrolysis ,Species Specificity ,X-Ray Diffraction ,Animals ,Electrophoresis, Paper ,Trypsin ,Amino Acid Sequence ,Amino Acids ,Molecular Biology ,Peptide sequence ,chemistry.chemical_classification ,Gel electrophoresis ,Muscles ,Proteins ,Cell Biology ,Peptide Fragments ,Amino acid ,Molecular Weight ,chemistry ,Electrophoresis, Polyacrylamide Gel ,Specific activity ,Rabbits ,Carbohydrate Epimerases ,Crystallization ,Chickens ,Triose-Phosphate Isomerase - Abstract
1. Triose phosphate isomerase was prepared by chromatography on DEAE-cellulose of an (NH4)2SO4 fraction of an extract of homogenized chicken breast muscle. The product is homogeneous on gel electrophoresis and is suitable for growing crystals for X-ray work. The specific activity is 10000 units/mg and the value for E0.1%280 is 1.20. 2. Comparison between the sum of the amino acid compositions of the tryptic peptides of the protein and the amino acid composition obtained on total hydrolysis of the protein indicates that the relative subunit mass is about 27000. 3. These data, together with the results of the examination of the amino acid compositions of a number of minor peptides, the number of peptides in the tryptic digest and the complete amino acid sequences of the tryptic peptides (the determination of which is described here), give no indication that the subunits are dissimilar. 4. A tentative amino acid sequence is presented for the protein, in which the ordering of the tryptic peptides is derived by homology with the sequence of the rabbit muscle enzyme (Corran & Waley, 1973). 5. An appendix describes the use that was made of mass spectrometry in the determination of some of the sequences. Mass-spectrometric data have been obtained for 35 residues, that is about 15% of the total sequence of the protein. 6. An extended version of the present paper has been deposited as Supplementary Publication SUP 50025 at the British Library, Lending Division (formerly the National Lending Library for Science and Technology), Boston Spa, Yorks. LS23 7BQ, U.K., from whom copies may be obtained on the terms given in Biochem. J. (1973) 131, 5.
- Published
- 1974
- Full Text
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12. Amino acid sequences of α-helical segments from S-carboxymethylkerateine-A. Tryptic and chymotryptic peptides from a type-II segment
- Author
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L M Dowling, W G Crewther, and D M Hogg
- Subjects
chemistry.chemical_classification ,S-carboxymethylkerateine ,Wool ,Chymotryptic digestion ,Alpha (ethology) ,Peptide ,Sequence (biology) ,Cell Biology ,Paper electrophoresis ,Chromatography, Ion Exchange ,Biochemistry ,Peptide Fragments ,Amino acid ,chemistry ,Animals ,Chymotrypsin ,Keratins ,Electrophoresis, Paper ,Trypsin ,Amino Acid Sequence ,Concentration gradient ,Molecular Biology ,Research Article - Abstract
1. Amino acid-sequence studies were done on a peptide of mol.wt. approx. 12500 that was isolated from the highly helical fragments obtained by partial chymotryptic digestion of the low-sulphur proteins (S-carboxymethylkerateine-A) from wool. 2. The peptides obtained by tryptic and chymotryptic digestion of this large peptide were separated by ion-exchange chromatography on DEAE-cellulose at pH8.5 with an (NH4)(2)CO(3) concentration gradient and, where necessary, purified further by paper electrophoresis. 3. Determination of the sequences of many of these peptides showed that a high proportion of the cationic residues occurs in pairs. 4. Although two of the four S-carboxymethylcysteine residues are located in what appears to be a non-helical region near the N-terminus the other two S-carboxymethylcysteine residues occur in or near sequences suggesting a helical conformation. 5. Some peptides were obtained, in low yields, that appeared to be homologues of more major ones. These suggest either homologies in the helical portions of the low-sulphur proteins or the presence of closely related amino acid sequences in helical regions of completely different origins. 6. A partial sequence of the complete peptide is proposed.
- Published
- 1978
- Full Text
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13. Poly(adenosine diphosphate ribose) metabolism and regulation of myocardial cell growth by oxygen
- Author
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Q. Perveen Ghani and Milton Hollenberg
- Subjects
Poly Adenosine Diphosphate Ribose ,History ,Chemical Phenomena ,Chromatography, Paper ,Poly ADP ribose polymerase ,Chick Embryo ,Pronase ,Biology ,Education ,Culture Techniques ,Animals ,Polymerase ,DNA synthesis ,Nucleoside Diphosphate Sugars ,Phosphoric Diester Hydrolases ,Myocardium ,Cellular Interactions and Control Processes ,Temperature ,Heart ,Deoxyribonuclease ,Metabolism ,Hydrogen-Ion Concentration ,Molecular biology ,Computer Science Applications ,Oxygen ,Chemistry ,Kinetics ,Paper chromatography ,Biochemistry ,biology.protein ,NAD+ kinase ,Poly(ADP-ribose) Polymerases ,Cell Division ,Chromatography, Liquid - Abstract
Control of the rate of cardiac cell division by oxygen occurs most probably by altering the redox state of a control substance, e.g. NAD(+)right harpoon over left harpoonNADH. NAD(+) (and not NADH) forms poly(ADP-ribose), an inhibitor of DNA synthesis, in a reaction catalysed by poly(ADP-ribose) polymerase. Lower partial pressure of oxygen, which increases the rate of division, would shift NAD(+)--NADH, decrease poly(ADP-ribose) synthesis, and increase DNA synthesis. Chick-embryo heart cells grown in culture in 20% O(2) (in which they divide more slowly than in 5% O(2)) did exhibit greater poly(ADP-ribose) polymerase activity (+83%, P0.001) than when grown in 5% O(2). Reaction product was identified as poly(ADP-ribose) by its insensitivity to deoxyribonuclease, ribonuclease, NAD glycohydrolase, Pronase, trypsin and micrococcal nuclease, and by its complete digestion with snake-venom phosphodiesterase to phosphoribosyl-AMP and AMP. Isolation of these digestion products by Dowex 1 (formate form) column chromatography and paper chromatography allowed calculation of average poly(ADP-ribose) chain length, which was 15-26% greater in 20% than in 5% O(2). Thus in 20% O(2) the increase in poly(ADP-ribose) formation results from chain elongation. Formation of new chains also occurs, probably to an even greater degree than chain elongation. Additionally, poly(ADP-ribose) polymerase has very different K(m) and V(max.) values and pH optima in 20% and 5% O(2). These data suggest that poly(ADP-ribose) metabolism participates in the regulation of heart-cell division by O(2), probably by several different mechanisms.
- Published
- 1978
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14. Synthesis of haem cytochrome c prosthetic group from δ-aminolaevulinate by the cell sap from rat liver
- Author
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Carmen Sáez De Córdova, Regina Cohén, and Nestor F. Gonzalez-Cadavid
- Subjects
Male ,Porphyrins ,Cytochrome ,Cytochrome c Group ,Heme ,Biochemistry ,chemistry.chemical_compound ,polycyclic compounds ,Animals ,Molecular Biology ,biology ,Protoporphyrin IX ,Cytochrome c ,Biosynthesis and Degradation ,Aminolevulinic Acid ,Cell Biology ,Ferrochelatase ,Levulinic Acids ,Rats ,Kinetics ,Paper chromatography ,Liver ,chemistry ,biology.protein ,Microsome ,Cytochromes ,Energy source - Abstract
To determine whether the prosthetic group of cytochrome c is synthesized and linked to the apoprotein in the cytosol or in connexion with the endoplasmic reticulum, we have studied the incorporation in vitro of delta-amino[(14)C]laevulinate into porphyrin compounds and cytochrome c by the cell sap from rat liver. The radioactive precursor was incorporated into a trichloroacetic acid-precipitable form partially resistant to extractions by acid solvents, suggesting the existence of a fraction covalently linked to protein. The activity was proportional to the amount of protein incubated, did not increase substantially by supplementation with the microsomal fraction and an energy source, and was very low in the pH5 fraction. Addition of increasing amounts of haemin inhibited the incorporation, as with purified delta-aminolaevulinate dehydratase. [(14)C]Protoporphyrin IX was identified by paper chromatography, together with a shoulder running as protohaem IX. The cell sap in the absence of ribosomes was also able to incorporate radioactivity into purified cytochrome c, and the addition of ribosomes significantly enhanced the activity. The precursors of haem c were synthesized in the soluble system by the known haem-synthetic pathway, as shown by the kinetics of labelling of the coproporphyrin, protoporphyrin and haem fractions, and the activities were concentrated in the precipitate obtained between 40 and 60% saturation with (NH(4))(2)SO(4). The presence of ferrochelatase was indicated by the incorporation of (55)Fe into proto- and haemato-haem identified by paper chromatography. It is concluded that the cell sap from rat liver contains the complete set of enzymes for the synthesis from delta-aminolaevulinate of haem c and its linkage to a small pool of free apoprotein c present in soluble form. This suggests that an ancillary pathway of haem synthesis occurs in the cytosol for at least the formation of the prosthetic group, which is linked post-translationally to that pool of apoprotein c synthesized by free polyribosomes.
- Published
- 1977
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15. Uridine diphosphate glucose dehydrogenase from cornea and epiphysial-plate cartilage
- Author
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G. De Luca, L. Galligani, Castellani Aa, Carlo L. Balduini, and A. Brovelli
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Chromatography, Paper ,Swine ,Glucuronates ,Dehydrogenase ,Biochemistry ,Cornea ,Glycosaminoglycan ,chemistry.chemical_compound ,Uridine Diphosphate Sugars ,Animals ,Molecular Biology ,chemistry.chemical_classification ,Carbon Isotopes ,Binding Sites ,Xylose ,biology ,Cell Biology ,Hydrogen-Ion Concentration ,Glucuronic acid ,Enzyme assay ,carbohydrates (lipids) ,Alcohol Oxidoreductases ,Kinetics ,Paper chromatography ,Cartilage ,Glucose ,Enzyme ,Animals, Newborn ,chemistry ,Enzymology ,biology.protein ,Cattle ,Spectrophotometry, Ultraviolet ,Chromatography, Thin Layer ,NAD+ kinase ,Epiphyses - Abstract
1. UDP-glucose dehydrogenase (EC 1.1.1.22) was extracted from epiphysial-plate cartilage of newborn pigs and from whole bovine corneas. 2. Formation of UDP-glucuronic acid was demonstrated by radioautography after separation of the sugar nucleotides by paper chromatography or t.l.c.: in these conditions a radioactive glucuronic acid spot also appears. 3. UDP-xylose prevented the formation in the incubation mixture of both UDP-glucuronic acid and free glucuronic acid. 4. In both tissues the dependence of the enzyme activity on pH and the Km values for UDP-glucose and NAD+ were determined. 5. Inhibition by UDP-xylose with respect to UDP-glucose was investigated. The plots of 1/v versus 1/[UDP-glucose], and of percentage inhibition versus UDP-xylose concentration and the Hill coefficient showed that a co-operative effect existed between UDP-xylose-binding sites. 6. The physiological meaning of the different affinities of cartilage and cornea enzymes for UDP-xylose is discussed and related to the different glycosaminoglycan contents of the two connective tissues studied.
- Published
- 1973
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16. O-Methyl sugars in lipopolysaccharides of Rhodospirillacea. Identification of 3-O-methyl-<scp>d</scp>-mannose in Rhodopseudomonas viridis and of 4-O-methyl-<scp>d</scp>-xylose and 3-O-methyl-6-deoxy-<scp>d</scp>-talose in Rhodopseudomonas palustris respectively
- Author
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Inge Fromme, Hubert Mayer, and Jürgen Weckesser
- Subjects
Strain (chemistry) ,Stereochemistry ,Mannose ,Cell Biology ,Biology ,Xylose ,Mass spectrometry ,biology.organism_classification ,Biochemistry ,Electrophoresis ,Paper chromatography ,chemistry.chemical_compound ,chemistry ,Rhodopseudomonas palustris ,Sugar ,Molecular Biology - Abstract
1. This paper deals with the identification of three O-methyl sugars in lipopolysaccharides isolated from strains of the Gram-negative photosynthetic family Rhodospirillaceae. In addition to the previously described 3-O-methyl-l-xylose, a second O-methyl sugar was encountered in the lipopolysaccharide of Rhodopseudomonas viridis F, namely 3-O-methyl-d-mannose. The lipopolysaccharides of two strains of Rhodopseudomonas palustris (strain 1e5 and 8/1) contain two O-methylsugars, 4-O-methyl-d-xylose and 3-O-methyl-6-deoxy-d-talose (d-acovenose). 4-O-Methyl-d-xylose, but not 3-O-methyl-6-deoxy-d-talose, could be identified in the lipopolysaccharides of the strains K/1 and 2/2 of the same species. 2. The O-methyl sugars described in this communication were isolated by paper chromatography and identified by g.l.c., paper chromatography, high-voltage electrophoresis and mass spectrometry. Besides the genuine sugars, their alditol acetates and their demethylated (parental) forms were investigated. Optical rotation measurements and, in one case, enzymic reactions were used to establish the optical configuration of the sugars under investigation.
- Published
- 1973
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17. Occurrence of 7-methylguanine in nucleic acids of rat liver
- Author
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Valda M. Craddock, P. N. Magee, and Saúl Villa-Treviño
- Subjects
History ,Guanine ,Chromatography, Paper ,Tritium ,Methylation ,Education ,chemistry.chemical_compound ,Methionine ,RNA, Transfer ,Microsomes ,Animals ,Carbon Isotopes ,RNA ,Articles ,DNA ,Chromatography, Ion Exchange ,Molecular biology ,Rats ,Computer Science Applications ,Paper chromatography ,Liver ,chemistry ,Biochemistry ,Microsome ,Nucleic acid ,Female - Abstract
1. Microsomal and soluble RNA of rat liver have been studied by column and paper chromatography after administration of [Me−14C]methionine; evidence was obtained for the occurrence of 7-methylguanine, the methyl group being derived from methionine. 2. No evidence was obtained for the occurrence of 7-methylguanine in DNA.
- Published
- 1968
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18. Glycyl-<scp>l</scp>-leucine hydrolase, a versatile ‘master’ dipeptidase from monkey small intestine
- Author
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Manjusri Das and A. N. Radhakrishnan
- Subjects
Dipeptidase ,Dipeptidases ,Arginine ,Chromatography, Paper ,Stereochemistry ,Glycine ,Biochemistry ,Structure-Activity Relationship ,chemistry.chemical_compound ,Leucine ,Intestine, Small ,medicine ,Animals ,Molecular Biology ,Glycylglycine ,chemistry.chemical_classification ,biology ,Haplorhini ,Cell Biology ,Hydrogen-Ion Concentration ,Electrophoresis, Disc ,Small intestine ,Molecular Weight ,Kinetics ,Paper chromatography ,Enzyme ,medicine.anatomical_structure ,chemistry ,Spectrophotometry ,Peptide transport ,Chromatography, Gel ,Enzymology ,biology.protein - Abstract
1. A highly active and electrophoretically homogeneous dipeptidase was purified from the soluble extracts of monkey small-intestinal mucosa. 2. By gel-filtration studies the molecular weight of the enzyme was found to be 107000. It is composed of two identical, subunits of molecular weight 54000. 3. A paper-chromatographic method of dipeptidase assay was developed to overcome some of the difficulties encountered in the generally used spectrophotometric procedure. By using this method, the Km and k0 values of a few substrates were determined. 4. The substrate specificity of the enzyme was investigated in great detail with substrates of a wide range of possible structural types. The enzyme hydrolyses a very large proportion of the range of dipeptides tested. This enzyme, which exhibits such a wide range of action, has been termed the ‘master’ dipeptidase of the intestine. Glycylglycine, glycyl-l-proline, glycyl-l-histidine, l-prolylglycine and some of the arginine- and aspartic acid-containing dipeptides were not substrates and are possibly hydrolysed by other peptidases. These results therefore suggest that in the intestine the number of dipeptidases is rather limited. 5. In the light of these findings, the implications on the role of dipeptidases in intestinal peptide transport are discussed.
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- 1973
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19. The pseudouridine contents of the ribosomal ribonucleic acids of three vertebrate species. Numerical correspondence between pseudouridine residues and 2′-O-methyl groups is not always conserved
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B E H Maden and D G Hughes
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Chemical Phenomena ,Chromatography, Paper ,Xenopus ,Methylation ,Biochemistry ,Pseudouridine ,Mice ,chemistry.chemical_compound ,L Cells ,biology.animal ,Animals ,Humans ,Uridine ,Molecular Biology ,Cells, Cultured ,biology ,RNA ,Vertebrate ,Cell Biology ,Ribosomal RNA ,biology.organism_classification ,Molecular biology ,Chemistry ,Paper chromatography ,chemistry ,RNA, Ribosomal ,HeLa Cells ,Research Article - Abstract
The pseudouridine contents of the rRNA species of HeLa cells, mouse L-cells and Xenopus laevis cultured kidney cells were examined. Pseudouridine, like 2′-O-methylation, was found to occur relatively frequently in each of the high-molecular-weight rRNA species. However, the numerical data do not support the idea that there is a general one-to-one relationship between pseudoridine residues and 2′-O-methyl groups in vertebrate rRNA.
- Published
- 1978
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20. Changes in disaccharide composition of heparan sulphate fractions with increasing degrees of sulphation
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S R Delaney and H E Conrad
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Chemical Phenomena ,Disaccharide ,Deamination ,Nitrous Acid ,Disaccharides ,Biochemistry ,Glycosaminoglycan ,chemistry.chemical_compound ,Sulfation ,medicine ,Blood Coagulation ,Molecular Biology ,Chromatography, High Pressure Liquid ,Glycosaminoglycans ,Nitrous acid ,Chromatography ,Heparin ,Sulfates ,Cell Biology ,Chromatography, Ion Exchange ,Chemistry ,Paper chromatography ,chemistry ,Composition (visual arts) ,Heparitin Sulfate ,Research Article ,medicine.drug - Abstract
Heparan sulphate by-products from the commercial manufacture of pig mucosal heparin were freed of chondroitin sulphate and fractionated according to anionic density. The fractions were treated with HNO2 at pH 1.5, and the resulting mixtures of oligosaccharides were reduced with NaB3H4 and analysed for their disaccharide composition by paper chromatography and by high-pressure liquid chromatography. The results show that the molar ratio of 2-O-sulpho-alpha-L-iduronosylanhydromannose to 6-O-sulpho-(2-O-sulpho-alpha-L-iduronosyl)anhydromannose decreased from 2.5 to 0.04 as the degree of sulphation of the fractions increased. In contrast, the molar ratio of 6-O-sulpho-(beta-D-glucuronosyl)anhydromannose to 6-O-sulpho-(alpha-L-iduronosyl)anhydromannose was approx. 2.4 in all heparan sulphate fractions and decreased to only half of this value in the most highly sulphated heparin fractions. These results are consistent with biosynthetic studies, which have shown that the N-sulpho-(2-O-sulpho-alpha-L-iduronosyl)D-glucosamine disaccharide is the metabolic precursor of the NO-disulpho-(2-O-sulpho-alpha-L-iduronosyl)-D-glucosamine disaccharide in heparin biosynthesis. The high-pressure liquid chromatography of the heparan sulphate oligosaccharides also revealed a number of unidentified oligosaccharides in the deamination mixtures.
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- 1983
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21. Structural studies of a mannitol teichoic acid from the cell wall of bacterium N.C.T.C. 9742
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S G Wilkinson and W J Anderton
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Magnetic Resonance Spectroscopy ,Stereochemistry ,Brevibacterium iodinum ,Biochemistry ,Cell wall ,chemistry.chemical_compound ,Hydrolysis ,Biopolymers ,Cell Wall ,Pyruvic Acid ,medicine ,Brevibacterium ,Organic chemistry ,Electrophoresis, Paper ,Pyruvates ,Molecular Biology ,Chromatography ,Teichoic acid ,biology ,Depolymerization ,Cell Biology ,biology.organism_classification ,Teichoic Acids ,Glucose ,Models, Chemical ,chemistry ,Phosphodiester bond ,Mannitol ,Research Article ,medicine.drug - Abstract
Degradative and n.m.r.-spectroscopic studies have been carried out on a novel mannitol teichoic acid extracted from the cell wall of bacterium N.C.T.C. 9742, for which the name Brevibacterium iodinum has been proposed. The backbone of the polymer is a poly(D-mannitol phosphate) containing 1--6 phosphodiester linkages. In most residues, pyruvic acid is acetal-linked to positions 4 and 5 of the mannitol. About half of the mannitol residues carry a beta-D-glucopyranosyl substituent at position 2. The glucosylmannitol was isolated and thoroughly characterized. At least 24 products were detected by ion-exchange chromatography and paper electrophoresis after alkaline hydrolysis of the polymer. Not all of these products could be identified. The main mechanistic pathways for depolymerization by the cleavage of phosphodiester linkages during alkaline hydrolysis involved (a) participation by the 2-hydroxy group and a cyclic phosphodiester intermediate (leading to a series of mannitol-based products) and (b) participation by the 3-hydroxy group in the cyclization of mannitol (leading to a series of products based on 1,4-anhydromannitol). The presence of glycerol phosphates in hydrolysates could be ascribed either to a linkage unit or to a separate glycerol teichoic acid. The mannitol teichoic acid was absent from the cell walls of Brevibacterium linens and Brevibacterium epidermis (one strain of each was examined).
- Published
- 1985
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22. 2,3-diamino-2,3-dideoxy-<scp>d</scp>-glucofuranurono-6,3-lactam from the hydrolysate of Pseudomonas aeruginosa P14 lipopolysaccharide
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N Suzuki and S Okuda
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Lipopolysaccharides ,Magnetic Resonance Spectroscopy ,Chemical Phenomena ,Amino sugar ,Chromatography, Paper ,medicine.disease_cause ,Polysaccharide ,Mass spectrometry ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,Hydrolysate ,Residue (chemistry) ,chemistry.chemical_compound ,medicine ,Electrophoresis, Paper ,Molecular Biology ,chemistry.chemical_classification ,Chromatography ,Pseudomonas aeruginosa ,Hydrolysis ,Cell Biology ,Chemistry ,chemistry ,Lactam ,Derivative (chemistry) ,Research Article - Abstract
An unknown amino sugar, U-7, which had been detected in the hydrolysate of the polysaccharide fraction (F-A) of Pseudomonas aeruginosa P14 lipopolysaccharide, was isolated from the hydrolysate of whole cells of this micro-organism and converted into the N-acetyl derivative (U-7NAc). On the basis of i.r.-absorption spectrometry, 13C-n.m.r. and 1H-n.m.r. spectroscopy and mass spectrometry, the structure of compound U-7NAc was identified as 2-acetamido-3-amino-2,3-dideoxyhexofuranurono-6,3-lactam. The configuration of compound U-7NAc was then unequivocally identified as 2-acetamido-3-amino-2,3-dideoxy-D-glucofuranurono-6,3-lactam by comparing the synthetic and natural compounds. Compound U-7 and synthetic 2,3-diamino-2,3-dideoxy-D-glucofuranurono-6,3-lactam showed the same behaviour on chromatography. G.l.c.-mass-spectral analyses of fraction F-A and synthetic 2,3-diacetamido-2,3-dideoxy-D-glucuronic acid after methanolyses and trimethylsilylations showed the presence of the same derivative. It was concluded that the amino sugar U-7 was produced from the 2,3-diacetamido-2,3-dideoxy-D-glucuronic acid residue present in fraction F-A.
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- 1983
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23. The identification of the folate conjugates found in rat liver 48 h after the administration of radioactively labelled folate tracers
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J A Blair and M J Connor
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Lactobacillus casei ,Time Factors ,Chemical Phenomena ,Endogeny ,Biochemistry ,Folic Acid ,Column chromatography ,Animals ,Molecular Biology ,Chromatography ,biology ,Chemistry ,Microbiological assay ,gamma-Glutamyl Hydrolase ,Cell Biology ,biology.organism_classification ,Rats ,Paper chromatography ,Pteroylpolyglutamic Acids ,Liver ,Sephadex ,Rat liver ,Biological Assay ,Research Article ,Conjugate - Abstract
About 70% of the radioactivity retained in the livers of rats dosed 48 h earlier with radioactively labelled folate was incorporated into two folate conjugates. The major derivative was purified and isolated by Sephadex G-15, DEAE-cellulose and DEAE-Sephadex ion-exchange column chromatography and paper chromatography. It was identified as 10-formylpteroylpentaglutamate by a combination of spectral, microbiological, chemical and chromatographic techniques. The minor conjugate, though less well characterized, exhibited similar properties and was assigned the structure 10-formylpteroyltetraglutamate. 10-Formylpteroylpentaglutamate (2.0nmol/g) and 10-formylpteroyltetraglutamate (0.25nmol/g) comprised about 20% of the total endogenous hepatic folate as determined by microbiological assay (Lactobacillus casei after conjugase treatment.
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- 1980
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24. Formulation of N-acetylputrescine and N1-acetylspermidine in cultured human lymphocytes
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M Menashe, J Faber, and Uriel Bachrach
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Chromatography ,Spermidine ,Thin layer ,Cell Biology ,Acetylputrescine ,N-acetylputrescine ,Mass spectrometry ,Biochemistry ,chemistry.chemical_compound ,Paper chromatography ,Putrescine biosynthesis ,Spermidine biosynthesis ,chemistry ,Putrescine ,Humans ,Chromatography, Thin Layer ,Lymphocytes ,Molecular Biology ,Cells, Cultured ,Research Article - Abstract
N-Acetylputrescine and N1-acetylspermidine were synthesized from putrescine in cultured human lymphocytes. They were identified by paper chromatography and t.l.c. Acetylputrescine was also identified by mass spectrometry. N-Acetylputrescine and N1-acetylspermidine were formed in untreated cells and in lectin-transformed cells.
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- 1980
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25. Role of human skin in the photodecomposition of bilirubin
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Bajpai Pc, Kapoor Cl, and Coimbatore R. Krishna Murti
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Adult ,Male ,Time Factors ,Light ,Photochemistry ,Bilirubin ,Receptors, Drug ,Human skin ,Biochemistry ,Epithelium ,Pigment ,chemistry.chemical_compound ,Yellow colour ,medicine ,Humans ,Molecular Biology ,Skin ,Binding Sites ,integumentary system ,Cellular Interactions and Control Processes ,Epithelial Cells ,Cell Biology ,Darkness ,Kinetics ,Paper chromatography ,medicine.anatomical_structure ,chemistry ,Spectrophotometry ,visual_art ,visual_art.visual_art_medium ,Spectrophotometry, Ultraviolet ,Protein Binding - Abstract
1. Human skin epithelium and human skin were found to absorb both free bilirubin and serum-bound bilirubin from an aqueous buffered medium. The serum-bound bilirubin thus absorbed was readily released when human skin epithelium or human skin were transferred to media containing no bilirubin. 2. The K(m) values for serum-bound bilirubin were 1.8x10(-3)m and 2.2x10(-3)m respectively for human skin epithelium and human skin; corresponding K(m) values for free bilirubin were 3.0x10(-4)m and 5x10(-4)m. The V(max.) for bound and free bilirubin was of the same magnitude, the apparent V(max.) being 1.0 and 1.66mumol/g of tissue for human skin epithelium and human skin respectively. 3. When human skin that had acquired a yellow tinge by absorbing bilirubin was incubated in a buffered medium and exposed to a mercury-vapour light, the yellow colour disappeared and decomposition products of bilirubin accumulated in the medium. 4. Experiments with [(3)H]bilirubin indicated that the pigment absorbed by skin was photo-oxidized to products that were soluble in water and the quantity and number of such products increased with the time of exposure of human skin to the light-source. Under similar conditions [(3)H]bilirubin alone in buffered medium was also oxidized and gave products which by paper chromatography appeared to be different from those released by human skin that had absorbed bilirubin. 5. The results suggest that by virtue of its large surface area human skin can act as a matrix for the degradative action of light on bilirubin.
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- 1974
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26. Role of cell membrane galactosyltransferase in concanavalin A agglutination of erythrocytes
- Author
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Daniel K. Podolsky and Milton M. Weiser
- Subjects
Erythrocytes ,Chromatography, Paper ,Biochemistry ,Cell membrane ,N-Acetyllactosamine Synthase ,Concanavalin A ,medicine ,Electrophoresis, Paper ,Molecular Biology ,chemistry.chemical_classification ,Galactosyltransferase ,biology ,Hemagglutination ,Cell Membrane ,Cell Biology ,Molecular biology ,Fetuin ,Enzyme structure ,Enzyme assay ,Agglutination (biology) ,Enzyme ,medicine.anatomical_structure ,chemistry ,Lactose Synthase ,biology.protein ,Asparagine ,Mannose ,Research Article - Abstract
It has been previously observed that rabbit erythrocyte cell surface galactosyltransferase appears to play a role in concanavalin A agglutination of these erythrocytes (Podolsky et al., 1974). Further, a correlation between the occurrence or level of cell surface galactosyltransferase and concanavalin A agglutinability of other cell types has also been observed. The mechanism by which rabbit erythrocyte galactosyltransferase participates in concanavalin A agglutination has now been further defined. The enzyme was solubilized and purified. Characterization of the enzyme properties has shown them to be similar to those reported for other purified galactosyltransferases. Amino acid and carbohydrate analysis showed a high asparagine content and the presence of D-mannose. Specific α-mannosidase treatment of the enzyme showed that some of these D-mannose residues were terminal sugars. The purified enzyme also conferred concanavalin A agglutinability to non-agglutinable human erythrocytes. However, the ability to confer concanavalin A agglutinability was unrelated to the enzyme activity per se (as measured with fetuin acceptor) but appeared to be entirely dependent on the presence of terminal α-linked D-mannosyl residues in the enzyme structure. These findings suggest that the presence of terminal α-mannosidyl residues on cell surface glycoproteins such as galactosyltransferase may be the determining factor in agglutination of cells by concanavalin A.
- Published
- 1975
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27. Chemical and biochemical studies on 18-hydroxyoestrone
- Author
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Lothar Siekmann, Heinz Breuer, and John K. Findlay
- Subjects
Male ,Chromatography, Gas ,Chromatography, Paper ,Estrone ,medicine.medical_treatment ,Borohydrides ,In Vitro Techniques ,Biochemistry ,Mass Spectrometry ,Steroid ,chemistry.chemical_compound ,Drug Stability ,Species Specificity ,medicine ,Animals ,Organic chemistry ,Fragmentation (cell biology) ,Molecular Biology ,Hydroxysteroids ,Estradiol ,Chemistry ,Cell Biology ,Hydrogen-Ion Concentration ,Alkali metal ,Lipids ,In vitro ,Rats ,Liver ,Mass spectrum ,Spectrophotometry, Ultraviolet ,Chromatography, Thin Layer ,Rabbits ,Methanol ,Norsteroids ,Oxidation-Reduction ,No formation - Abstract
1. 18-Hydroxyoestrone was reduced by NaBH(4) in methanol, giving 18-hydroxyoestradiol-17alpha and 18-hydroxyoestradiol-17beta in the ratio 3:7. 2. Treatment of 18-hydroxyoestrone with a strong alkali yielded 18-noroestrone; however, the 18-hydroxyoestradiols did not undergo transformation to their respective 18-nor derivatives. 3. All the 18-hydroxylated oestrogens were stable under acid conditions. They formed Kober chromogens: the chromogenicity of 18-hydroxyoestrone was only one-third that of the 18-hydroxyoestradiols and oestriol. 4. Paper-, thin-layer- and gas-liquid-chromatographic systems for the characterization of these compounds are described. 5. An examination of the mass spectra revealed peaks characteristic of the substituted carbon atoms. Definite assignment of the 17alpha- and 17beta-hydroxyl groups of the epimeric 18-hydroxyoestrogens was possible by characteristic fragmentation of the free steroids. Further, the configuration of 18-hydroxyoestradiol-17beta was confirmed by the formation of the dimethylsildioxy derivative of the 3-methylether of the steroid. 6. Both rat and rabbit liver slices reduced 18-hydroxyoestrone to 18-hydroxyoestradiol-17beta and some other labile, polar metabolites with properties similar to 2-hydroxylated oestrogens. No formation of 18-hydroxyoestradiol-17alpha in vitro was observed. 7. The results are discussed with respect to the possible influence of the 18-hydroxyl group on reactions at C-17, as well as the reactions of 18-hydroxylated oestrogens with strong acid (Kober reactions) and alkali.
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- 1974
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28. The enzymology of adenosine triphosphate sulphurylase from spinach leaf tissue. Kinetic studies and a proposed reaction mechanism
- Author
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W. H. Shaw and John W. Anderson
- Subjects
Chromatography, Paper ,Stereochemistry ,Biochemistry ,chemistry.chemical_compound ,Adenosine Triphosphate ,ATP hydrolysis ,medicine ,Electrophoresis, Paper ,Magnesium ,Molecular Biology ,chemistry.chemical_classification ,biology ,Sulfates ,Chemistry ,Chemiosmosis ,Chlorate ,Cell Biology ,Plants ,biology.organism_classification ,Nucleotidyltransferases ,Adenosine ,Adenosine Diphosphate ,Enzyme Activation ,Kinetics ,Adenosine diphosphate ,Enzyme ,Enzymology ,Spinach ,Adenosine triphosphate ,medicine.drug - Abstract
1. Sulphate-dependent PP(i)-ATP exchange, catalysed by purified spinach leaf ATP sulphurylase, was correlated with the concentration of MgATP(2-) and MgP(2)O(7) (2-); ATP sulphurylase activity was not correlated with the concentration of free Mg(2+). 2. Sulphate-dependent PP(i)-ATP exchange was independent of PP(i) concentration, but dependent on the concentration of ATP and sulphate. The rate of sulphate-dependent PP(i)-ATP exchange was quantitatively defined by the rate equation applicable to the initial rate of a bireactant sequential mechanism under steady-state conditions. 3. Chlorate, nitrate and ADP inhibited the exchange reaction. The inhibition by chlorate and nitrate was uncompetitive with respect to ATP and competitive with respect to sulphate. The inhibition by ADP was competitive with respect to ATP and non-competitive with respect to sulphate. 4. ATP sulphurylase catalysed the synthesis of [(32)P]ATP from [(32)P]PP(i) and adenosine 5'-sulphatophosphate in the absence of sulphate; some properties of the reaction are described. Enzyme activity was dependent on the concentration of PP(i) and adenosine 5'-sulphatophosphate. 5. The synthesis of ATP from PP(i) and adenosine 5'-sulphatophosphate was inhibited by sulphate and ATP. The inhibition by sulphate was non-competitive with respect to PP(i) and adenosine 5'-sulphatophosphate; the inhibition by ATP was competitive with respect to adenosine 5'-sulphatophosphate and non-competitive with respect to PP(i). It was concluded that the reaction catalysed by spinach leaf ATP sulphurylase was ordered; expressing the order in the forward direction, MgATP(2-) was the first product to react with the enzyme and MgP(2)O(7) (2-) was the first product released. 6. The expected exchange reaction between sulphate and adenosine 5'-sulphatophosphate could not be demonstrated.
- Published
- 1974
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29. Confirmation of <scp>d</scp>-aspartic acid in the novel dipeptide β-aspartylglycine isolated from tissue extract of Aplysia kurodai
- Author
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Nobuhiro Kanno, M Sato, T Yamaguchi, and Y Sato
- Subjects
Protein Conformation ,Ion chromatography ,Glycine ,Peptide ,Biochemistry ,High-performance liquid chromatography ,chemistry.chemical_compound ,Protein structure ,Aplysia ,Aspartic acid ,Animals ,Electrophoresis, Paper ,Tissue Distribution ,Molecular Biology ,Chromatography, High Pressure Liquid ,chemistry.chemical_classification ,Aspartic Acid ,Dipeptide ,Chromatography ,biology ,Dipeptides ,Cell Biology ,Chromatography, Ion Exchange ,biology.organism_classification ,chemistry ,Research Article - Abstract
A novel o-phthalaldehyde-reactive compound was found in the h.p.l.c. chromatogram of Aplysia kurodai extract. This compound was isolated by ion-exchange chromatography and preparative high-voltage paper electrophoresis. It was shown by optical-rotatory-dispersion spectrum and optical-resolution h.p.l.c. analysis that this compound consisted of equimolar amounts of D-aspartic acid and glycine. This compound resisted cleavage in the Edman reaction. This peptide was inferred to be beta-D-aspartylglycine, and this was confirmed by synthesis. beta-D-Aspartylglycine was detected in all tissues of Aplysia kurodai, with especially high concentrations in body wall (skin and muscle) and gill.
- Published
- 1989
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30. Biosynthesis of penicillin N and cephalosporin C. Antibiotic production and other features of the metabolism of a Cephalosporium sp
- Author
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S. C. Warren, Edward P. Abraham, Brenda Smith, and G. G. F. Newton
- Subjects
Electrophoresis ,Hypha ,Chromatography, Paper ,medicine.drug_class ,General Mathematics ,Cephalosporin ,Penicillins ,Biology ,chemistry.chemical_compound ,medicine ,Ultrasonics ,Amino Acids ,Molecular Biology ,Mycelium ,chemistry.chemical_classification ,Carbon Isotopes ,Growth medium ,Chromatography ,Performic acid ,Applied Mathematics ,Articles ,Cephalosporin C ,Cephalosporins ,Amino acid ,Acremonium ,Chemically defined medium ,Biochemistry ,chemistry ,Mutation - Abstract
1. The production of penicillin N and cephalosporin C by two mutants of a Cephalosporium sp. has been studied with cultures grown in a chemically defined medium and with suspensions of washed mycelium in water or a buffered salt solution. 2. Antibiotic synthesis began at an early stage of growth and its rate per unit weight of mycelium appeared to pass its maximum as morphological changes were occurring in young hyphae. This rate subsequently declined, but rapid production could continue after net growth had ceased. 3. In a series of shake-flask fermentations in the growth medium, increases in the yield of penicillin N above the mean were correlated with much smaller increases in the yield of cephalosporin C and vice versa. 4. In suspensions of washed mycelium, moderate decreases in the efficiency of aeration increased the yield of penicillin N and decreased that of cephalosporin C. A similar result normally followed the addition of methionine to the suspension fluid, and in both cases there was usually an increase in the yield of the two antibiotics combined. 5. The apparent intracellular concentrations of the antibiotics were much lower than those attained extracellularly and also much lower than those of most of the amino acids in the intracellular pool. No detectable amount of [(14)C]penicillin N added to the extracellular fluid was found to enter the mycelium. 6. Very small amounts of peptide material whose behaviour was similar to that of the sulphonic acid of delta-(alpha-amino-adipoyl)cysteinylvaline on paper electrophoresis at pH1.8 were found in extracts of the mycelium that had been oxidized with performic acid. 6-Aminopenicillanic acid and 7-aminocephalosporanic acid were not detected. 7. Ultrasonic treatment of the mycelium resulted in rapid fragmentation of mycelial chains, rupture of many individual cells, and the liberation of amino acids and other substances into the medium. 8. Ultrasonically treated preparations synthesized penicillin N and cephalosporin C rapidly after a lag of 12hr. Antibiotic synthesis was accompanied by the growth of hyphae from swollen mycelial fragments and by the re-establishment of permeability barriers resulting in the uptake of amino acids from the medium.
- Published
- 1967
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31. The amino acid sequence of cytochrome c′ from Alcaligenes sp. N.C.I.B. 11015
- Author
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R P Ambler
- Subjects
Chromatium ,Chromatography, Paper ,Cytochrome c Group ,Heme ,Biochemistry ,chemistry.chemical_compound ,Pseudomonas ,Papain ,Electrophoresis, Paper ,Alcaligenes ,Amino Acid Sequence ,Pseudomonas denitrificans ,Microfilming ,Molecular Biology ,Peptide sequence ,biology ,Cytochrome c ,Proteins ,Cell Biology ,biology.organism_classification ,Paper chromatography ,chemistry ,Chromatography, Gel ,biology.protein ,Peptides - Abstract
The amino acid sequence of the cytochrome c′ from Alcaligenes sp. N.C.I.B. 11015 (Iwasaki's ‘Pseudomonas denitrificans’) has been determined. This organism is the only non-photosynthetic bacterium in which the protein has been found. The protein consists of a single polypeptide chain of 127 residues, with a single haem covalently attached to two cysteines. Unlike normal cytochromes c, the haem attachment site is very close to the C-terminus. The amino acid sequence around the haem attachment site is very similar to that of Chromatium vinosum D cytochrome c′. Detailed evidence for the amino acid sequence of the protein has been deposited as Supplementary Publication SUP 50022 at the British Library (Lending Division), (formerly the National Lending Library for Science and Technology), Boston Spa, Yorks. LS23 7BQ, U.K., from whom copies may be obtained on the terms given in Biochem. J. (1973) 131, 5.
- Published
- 1973
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32. Studies of lipid A fractions from the lipopolysaccharides of Pseudomonas aeruginosa and Pseudomonas alcaligenes
- Author
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George W. Gray, James A. Lomax, Stephen G. Wilkinson, and David T. Drewry
- Subjects
Lipopolysaccharides ,Chromatography, Gas ,Chromatography, Paper ,Acylation ,Disaccharide ,Disaccharides ,medicine.disease_cause ,Biochemistry ,Lipid A ,chemistry.chemical_compound ,Glucosamine ,Pseudomonas ,Alkanes ,medicine ,Electrophoresis, Paper ,Molecular Biology ,biology ,Pseudomonas aeruginosa ,Fatty Acids ,Cell Biology ,Alkaline Phosphatase ,biology.organism_classification ,Lipids ,Pseudomonas alcaligenes ,Paper chromatography ,Hexosaminidases ,chemistry ,Chromatography, Gel ,lipids (amino acids, peptides, and proteins) ,Chromatography, Thin Layer ,Alcaligenes - Abstract
Lipid A fractions from Pseudomonas aeruginosa and Pseudomonas alcaligenes have similar compositions and structural features. By means of hydrazinolysis of the parent lipopolysaccharides and partial hydrolysis of the deacylation products, it was established that both lipids are derived from the β-(1→6)-linked disaccharide of glucosamine. Phosphorylated derivatives of the disaccharide from Ps. aeruginosa were also characterized. The lipids differ mainly in the absence of hexadecanoic acid and 2-hydroxydodecanoic acid from the lipid from Ps. alcaligenes. Evidence that in Ps. aeruginosa these acids are ester-linked to residues of 3-hydroxyalkanoic acids (including 3-hydroxydecanoic acid) was obtained. Heterogeneity of lipid A fractions was indicated by t.l.c., and by gel filtration of de-O-acylation products from mild alkaline methanolysis of the lipids.
- Published
- 1973
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33. Heparan sulphate sulphotransferase. Properties of an enzyme from ox lung
- Author
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T. Foley and J R Baker
- Subjects
Electrophoresis ,Chromatography, Paper ,Sulfurtransferase ,Kidney ,Sulfur Radioisotopes ,Biochemistry ,Glycosaminoglycan ,chemistry.chemical_compound ,Intestine, Small ,medicine ,Animals ,Lung ,Molecular Biology ,chemistry.chemical_classification ,Nitrous acid ,Chromatography ,Brain ,Substrate (chemistry) ,Cell Biology ,Heparin ,Hydrogen-Ion Concentration ,carbohydrates (lipids) ,Paper chromatography ,Enzyme ,Liver ,chemistry ,Sephadex ,Sulfurtransferases ,Chromatography, Gel ,Enzymology ,Cattle ,Heparitin Sulfate ,medicine.drug - Abstract
A heparan sulphate sulphotransferase was partially purified from an ox lung homogenate by (NH(4))(2)SO(4) precipitation. Various glycosaminoglycans were assayed as sulphate acceptors with this enzyme. The highest acceptor activity was obtained with desulphated heparin and heparan sulphate, which indicates that sulphate transfer may be to free amino groups of the substrate. Some heparan sulphate was (35)S-labelled by incubation with the enzyme and re-isolated. On treatment of this heparan [(35)S]sulphate with nitrous acid and separation of the degradation products on Sephadex G-15, a major peak of radioactivity was obtained, and identified as [(35)S]sulphate by high-voltage electrophoresis at pH5.3. The [(35)S]sulphate is believed to be derived from N-[(35)S]sulphated groups of heparan [(35)S]-sulphate. That the ox lung preparation contained an N-sulphotransferase was confirmed by the isolation of 2-deoxy-2-[(35)S]sulphoamino-d-glucose as the major product from the flavobacterial degradation of heparan [(35)S]sulphate.
- Published
- 1973
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34. Terminal sequence studies of high-molecular-weight ribonucleic acid. The 3′-termini of rabbit globin messenger ribonucleic acid
- Author
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John A. Hunt
- Subjects
Reticulocytes ,Oligonucleotides ,Tritium ,Biochemistry ,Chromatography, DEAE-Cellulose ,chemistry.chemical_compound ,Ribonucleases ,Column chromatography ,Biosynthesis ,Nucleic Acids ,Polysome ,Centrifugation, Density Gradient ,Isoniazid ,Animals ,Electrophoresis, Paper ,Nucleotide ,RNA, Messenger ,Ribonuclease ,Globin ,Pancreas ,Molecular Biology ,chemistry.chemical_classification ,Carbon Isotopes ,Messenger RNA ,Binding Sites ,Base Sequence ,biology ,RNA ,Cell Biology ,Ribonucleotides ,Chromatography, Ion Exchange ,Molecular biology ,Globins ,Molecular Weight ,chemistry ,RNA, Ribosomal ,Spectrophotometry ,biology.protein ,Electrophoresis, Polyacrylamide Gel ,Spectrophotometry, Ultraviolet ,Rabbits - Abstract
Haemoglobin mRNA isolated from EDTA-treated polyribosomes has an apparent molecular weight of 120000–180000 estimated by condensation with 3H-labelled isoniazid after periodate oxidation. Analysis of the ribonuclease digests of isoniazid-labelled RNA by paper electrophoresis and column chromatography enables the amount of contaminating 18S, 7S, 5S and 4S RNA to be estimated, and a corrected molecular weight of globin mRNA as the acid is 161000 or 500 nucleotides in length. This molecule contains two groups of 3′-terminal sequences in equal yield; G-Y-A6 and G-Y-A7 in the ratio 3:2, and G-N9–16-Y-A2 and G-N9–16-Y-N3 in the ratio 3:2. The significance of these sequences is discussed in relation to the poly(A) content of globin mRNA, the specificity of the sequences, and possible function in processing and biosynthesis of mRNA.
- Published
- 1973
- Full Text
- View/download PDF
35. Studies on the high-sulphur proteins of reduced Merino wool. Amino acid sequence of protein SCMKB-IIIA3
- Author
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Louis S. Swart and Thomas Haylett
- Subjects
chemistry.chemical_classification ,Chromatography ,Chymotrypsin ,Edman degradation ,biology ,Cell Biology ,Biochemistry ,Amino acid ,Paper chromatography ,Residue (chemistry) ,chemistry ,Thermolysin ,Sephadex ,biology.protein ,Molecular Biology ,Peptide sequence - Abstract
The complete amino acid sequences of wool protein SCMKB-IIIA3 (131 residues) and a minor component SCMKB-IIIA3A (130 residues) have been determined. The proteins are mutually homologous and have free threonine as the N-terminal residue and carboxymethylcysteine as the C-terminus. The peptides used for the sequence work were obtained by trypsin, thermolysin, pepsin and chymotrypsin digestions and were fractionated by chromatography on DEAE-cellulose, gel filtration on Sephadex G-25 and G-50, paper chromatography and electrophoresis. The Edman degradation method (employing both the Beckman Sequencer and a non-automatic procedure) was used to obtain the sequences of the peptides.
- Published
- 1973
- Full Text
- View/download PDF
36. A second activation peptide from bovine cationic trypsinogen
- Author
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R E Offord and D Webster
- Subjects
chemistry.chemical_classification ,Trypsinogen ,Cationic polymerization ,Activation peptide ,Peptide ,Cell Biology ,Paper electrophoresis ,Biochemistry ,Molecular biology ,Peptide Fragments ,Staining ,Enzyme Activation ,Electrophoresis ,chemistry.chemical_compound ,chemistry ,Ninhydrin ,Animals ,Cattle ,Amino Acid Sequence ,Molecular Biology ,Research Article - Abstract
1. Although only one activation peptide of bovine cationic trypsinogen has been reported previously, the peptide fraction obtained from activation mixtures shows several bands on paper electrophoresis at pH 6.5. 2. The major band was the peptide previously described. The band second in intensity of staining with ninhydrin (10-20% of that of the main band, as judged by eye) had an electrophoretic mobility consistent with its being related to the main peptide. It appeared on activation both of bulk commercial samples of trypsinogen and, as the Appendix shows, of samples prepared from pancreases obtained at the local abattoir. 3. The second peptide proved to be Phe-Pro-Val-Asp-Asp-Asp-Asp-Lys, and we conclude that it is another activation peptide. We discuss briefly the genetic and phylogenetic implications of our findings.
- Published
- 1977
- Full Text
- View/download PDF
37. The preparation and analysis of a new trinucleotide from yeast ribonucleic acid, containing two adjacent 2′-O-methylpentose residues
- Author
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A.R. Trim and Janet E. Parker
- Subjects
chemistry.chemical_classification ,Base Sequence ,Chromatography, Paper ,Phosphoric Diester Hydrolases ,Pentoses ,Polynucleotides ,Oligonucleotides ,RNA ,Pentose ,Saccharomyces cerevisiae ,Cell Biology ,Biology ,Alkaline Phosphatase ,Methylation ,Biochemistry ,Yeast ,Residue (chemistry) ,chemistry ,Nucleic Acids ,Escherichia coli ,Electrophoresis, Paper ,Spectrophotometry, Ultraviolet ,Molecular Biology - Abstract
Quantities of the order of 10mg of three alkali-stable trinucleotides were prepared from yeast ribonucleic acid. Analyses showed that they were of the type N1m-N2m-N3p, where m signifies 2′-O-methylation of the pentose residue. One, Am-Um-Gp, is newly described.
- Published
- 1973
- Full Text
- View/download PDF
38. Comparison of the amino acid sequences of the variable regions of light chains derived from two homogeneous rabbit anti-pneumococcal antibodies
- Author
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Jean-Claude Jaton
- Subjects
Threonine ,Stereochemistry ,Glycine ,Immunoglobulin light chain ,Biochemistry ,Glutamates ,Valine ,Aspartic acid ,Serine ,Animals ,Electrophoresis, Paper ,Amino Acid Sequence ,Asparagine ,Amino Acids ,Immunoglobulin Fragments ,Molecular Biology ,Peptide sequence ,Alanine ,chemistry.chemical_classification ,Aspartic Acid ,Autoanalysis ,Hydrolysis ,Aconitic Acid ,Proteins ,Cell Biology ,Antibodies, Bacterial ,Amino acid ,Streptococcus pneumoniae ,chemistry ,Chromatography, Gel ,Tyrosine ,Rabbits - Abstract
The amino acid sequence of the N-terminal 139 residues of the L (light) chain derived from a homogeneous rabbit antibody to type III pneumococci was determined. This L chain, designated BS-5, exhibits a greater degree of homology with the basic sequence of human κ chains of subgroup I (72%) than with subgroups II and III. L-chain BS-5 differs from another L chain (BS-1), also derived from an antibody to type III pneumococci (Jaton, 1974), by eight amino acid residues, even though the chains are identical within the N-terminal 30 residues. Six of these eight substitutions are located within the three hypervariable sections of the variable half: Asn/Ser in position 31, Glu/Ala in position 55, Asx/Thr, Thr/Gly, Thr/Gly and Val/Tyr in positions 92, 94, 96 and 97 respectively. The two anti-pneumococcal L chains BS-1 and BS-5 are much more similar to each other than to an anti-azobenzoate L chain (Appella et al., 1973), from which they differ by 30 and 29 residues respectively. Of these interchanges 13–15 are confined to the three hypervariable sections, and 11 occur within the N-terminal 27 positions. The three chains have an identical sequence from residue 98 to residue 139, except for a possible inversion of two residues in positions 130–131 of the anti-azobenzoate chain.
- Published
- 1974
- Full Text
- View/download PDF
39. Role of apurinic sites in the resistance of methylated oligodeoxyribonucleotides to degradation by spleen exonuclease
- Author
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G. P Margison, P. J O'Connor, and A Cornish-Bowden
- Subjects
Exonucleases ,Exonuclease ,Guanine ,Time Factors ,Chromatography, Paper ,Oligonucleotides ,Binding, Competitive ,Methylation ,Biochemistry ,chemistry.chemical_compound ,AP site ,Molecular Biology ,chemistry.chemical_classification ,Binding Sites ,biology ,Oligonucleotide ,Adenine ,Substrate (chemistry) ,DNA ,Cell Biology ,Enzyme assay ,Kinetics ,Enzyme ,Oligodeoxyribonucleotides ,chemistry ,Chromatography, Gel ,biology.protein ,Spleen ,Research Article - Abstract
The effect of introducing methyl groups into DNA substrates was studied by using the spleen exonuclease (EC 3.1.4.1), an enzyme which hydrolyses oligonucleotides in a sequential manner by splitting off 3′-phosphomononucleotides starting from the 5′-hydroxyl terminus. Analyses of oligodeoxyribonucleotide 3′-phosphate substrates after reaction in vitro with dimethyl sulphate demonstrated that the resultant methylation pattern differed from the previously found for native DNA, particularly with respect to the relative amounts of 1- and 3-methyladenine produced. Although after treatment with increasing amounts of dimethyl sulphate the substrate became progressively resistant to degradation by the exonuclease, the methylation products themselves were only partially responsible for the observed inhibition of enzyme activity. The incomplete degradation encountered was apparently due to the presence of apurinic sites, which arose as secondary lesions after the spontaneous release of the labile alkyl purines from the methylated substrate. Inhibition of enzyme activity appeared to be competitive, being characterized by constant values for apparent Vmax, and increased values for apparent Km. the interpretation of this, however, is complicated by the complex nature of the substrate, and these aspects are considered in some detail.
- Published
- 1975
- Full Text
- View/download PDF
40. Urinary excretion of sulphated N-acetylhexosamines in patients with various mucopolysaccharidoses
- Author
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H Elliott and John J. Hopwood
- Subjects
medicine.medical_specialty ,Acetylgalactosamine ,Chromatography, Paper ,Mucopolysaccharidosis ,Oligosaccharides ,Galactosamine ,Human skin ,Urine ,Biochemistry ,Acetylglucosamine ,Structure-Activity Relationship ,chemistry.chemical_compound ,Urinary excretion ,Internal medicine ,medicine ,Humans ,Chondroitin ,In patient ,Amino Acids ,Molecular Biology ,Incubation ,Cells, Cultured ,chemistry.chemical_classification ,Cell Biology ,Fibroblasts ,Mucopolysaccharidoses ,Oligosaccharide ,medicine.disease ,Endocrinology ,chemistry ,Research Article - Abstract
Sulphated N-acetylhexosamines have been isolated from human urine and tentatively identified as N-acetylglucosamine 6-sulphate (GlcNAc6S), N-acetylgalactosamine 6-sulphate (GalNAc6S), N-acetylgalactosamine 4-sulphate (GalNAc4S) and N-acetylgalactosamine 4,6-disulphate (GalNAc4,6diS). Urine from mucopolysaccharidosis-Type-IIID, -IVA and -VI patients compared with that from normal individuals contains elevated levels of GlcNAc6S (380-fold), GalNAc6S (180-fold) and GalNAc4S (420-fold) respectively. Urine from mucopolysaccharidosis-Type-VI patients also contain more than 600 times the normal level of GalNAc4,6diS. Urine from a mucolipidosis-Type-II and a multiple-sulphatase-deficient patient, and, in general, all mucopolysaccharidosis patients studied, contain at least 5-10-fold elevations of sulphated N-acetylhexosamines over the levels detected in urine from normal controls and a alpha-mannosidosis patient. Urine from patients with clinically mild phenotypes contains less sulphated N-acetylhexosamines than isolated from urine of clinically severe mucopolysaccharidosis patients. The source of the four sulphated N-acetylhexosamines is not known. However, incubation of a series of oligosaccharide substrates, derived from keratan sulphate and chondroitin 6-sulphate and containing non-reducing-end beta-linked 6-sulphated N-acetylhexosamine residues, with homogenates of cultured human skin fibroblasts has indirectly been shown to release GlcNA6S and GalNAc6S respectively. Release of GalNAc4S could not be demonstrated in similar incubations of oligosaccharide substrates derived from chondroitin 4-sulphate and containing non-reducing-end beta-linked GalNAc4S residues. We propose that some, if not all, of the sulphated N-acetylhexosamine present in human urine is derived from the action of beta-N-acetylhexosaminidase on sulphated GlcNAc or GalNAc residues at the non-reducing end of keratan sulphate, dermatan sulphate or chondroitin sulphate.
- Published
- 1985
- Full Text
- View/download PDF
41. A membrane-associated lipomannan in micrococci
- Author
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D.A. Powell, M. Duckworth, and J. Baddiley
- Subjects
Lipopolysaccharides ,Chromatography, Paper ,Membrane lipids ,Molecular Conformation ,Micrococcus ,Borohydrides ,Cell Fractionation ,Methylation ,Biochemistry ,Chromatography, Affinity ,Chromatography, DEAE-Cellulose ,Mannans ,chemistry.chemical_compound ,Formaldehyde ,Glycerol ,Molecular Biology ,Mannan ,chemistry.chemical_classification ,Membranes ,Lipomannan ,biology ,Fatty Acids ,Fatty acid ,Cell Biology ,biology.organism_classification ,Molecular Weight ,Membrane ,chemistry ,Succinic acid ,Ultracentrifugation ,Research Article - Abstract
Membranes of Micrococcus lysodeikticus, Micrococcus flavus and Micrococcus sodonensis contain acidic lipomannans. Lipoteichoic acids could not be detected in these organisms, and the suggestion that they are substituted for by the lipomannans is strengthened by the chemical and physical resemblances between the two polymers. The mannans contain glycerol, ester-linked fatty acids and mono-esterified succinic acid residues, giving them both hydrophobic and charged properties. The M. lysodeikticus mannan has a chain of about 60 hexose units with two branch points, and is joined at its reducing end to the 1-position of a glycerol moiety bearing two fatty acid residues. Succinic acid on the mannan enables it to bind Mg2+ efficiently, and the polymer is firmly associated with the cytoplasmic membrane, probably by intercalation of its fatty acids with those of the membrane lipids.
- Published
- 1975
- Full Text
- View/download PDF
42. The use of deoxyfluoro-<scp>d</scp>-galactopyranoses in a study of yeast galactokinase specificity
- Author
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Eric M. Bessell, John H. Westwood, and Peter Thomas
- Subjects
Chromatography, Paper ,Biology ,medicine.disease_cause ,Biochemistry ,Fucose ,chemistry.chemical_compound ,Adenosine Triphosphate ,Yeasts ,Escherichia coli ,medicine ,Magnesium ,Binding site ,Molecular Biology ,Binding Sites ,Computers ,Phosphotransferases ,Galactose ,Substrate (chemistry) ,Fluorine ,Cell Biology ,Galactokinase ,Yeast ,Kinetics ,chemistry ,Spectrophotometry ,Enzymology ,Adenosine triphosphate - Abstract
1. 2-Deoxy-2-fluoro-d-galactose, 3-deoxy-3-fluoro-d-galactose, 4-deoxy-4-fluoro-d-galactose, 6-deoxy-6-fluoro-d-galactose and 2-deoxy-d-lyxo-hexose are substrates for yeast galactokinase. 2. The variation in Km values for the d-hexose derivatives was not associated with a variation in the value of Km for MgATP2- indicating that the binding of MgATP2- is not modified by the binding of the sugar substrate. 3. Donated H bonds from OH-3, OH-4 and OH-6 and an accepted H bond to OH-2 of the d-hexose are important for the binding of the sugar substrate to galactokinase. 4. Yeast galactokinase exhibits similar kinetics to the galactokinase from Escherichia coli and operates by a similar random sequential mechanism. 5. 4-Deoxy-4-fluoro-d-glucose was neither a substrate for nor an inhibitor of yeast galactokinase.
- Published
- 1974
- Full Text
- View/download PDF
43. Measurement of xylanase activity with insoluble xylan substrate
- Author
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T M Enari, M Nummi, J M Perrin, and M L Niku-Paavola
- Subjects
animal structures ,Glycoside Hydrolases ,macromolecular substances ,engineering.material ,Xylose ,Biochemistry ,chemistry.chemical_compound ,Hydrolysis ,Nephelometry and Turbidimetry ,Polysaccharides ,Organic chemistry ,Sugar ,Molecular Biology ,Trichoderma ,Endo-1,4-beta Xylanases ,Chromatography ,Pulp (paper) ,technology, industry, and agriculture ,food and beverages ,Substrate (chemistry) ,Cell Biology ,Xylan ,carbohydrates (lipids) ,Aspergillus ,Xylosidases ,chemistry ,engineering ,Xylanase ,Xylans ,Acid hydrolysis ,Research Article - Abstract
Insoluble xylan was prepared from ground birch (Betula pubescens) pulp by alkali extraction and precipitation with ethanol. The only sugar detected after acid hydrolysis of the preparation was xylose. The insoluble xylan was used as substrate in a nephelometric assay to determine the xylanase (EC 3.2.1.8, 1,4-beta-D-xylan xylanohydrolase and EC 3.2.1.37, 1,4-beta-D-xylan xylohydrolase) activities of Aspergillus and Trichoderma enzymes. The nephelometric method is reliable in evaluating xylanase hydrolysis of insoluble xylan.
- Published
- 1985
- Full Text
- View/download PDF
44. Metabolism of 3-deoxy-3-fluoro-<scp>d</scp>-mannose and 4-deoxy-4-fluoro-<scp>d</scp>-mannose by Saccharomyces cerevisiae S288C
- Author
-
T J Grier and J R Rasmussen
- Subjects
Chromatography, Paper ,Saccharomyces cerevisiae ,Mannose ,Deoxyglucose ,Biology ,Polysaccharide ,Rhamnose ,Biochemistry ,chemistry.chemical_compound ,heterocyclic compounds ,Carbon Radioisotopes ,Sugar ,Molecular Biology ,Incubation ,Chromatography, High Pressure Liquid ,chemistry.chemical_classification ,Cell Biology ,Metabolism ,biology.organism_classification ,3-deoxy-3-fluoro-D-mannose ,Yeast ,chemistry ,Spectrophotometry, Ultraviolet ,Research Article - Abstract
Incubation of Saccharomyces cerevisiae S288C with 4-deoxy-4-fluoro-D-[1-14C]-mannose resulted in the formation of three metabolites that were characterized as 4-deoxy-4-fluoro-D-[1-14C]mannose 1,6-bisphosphate, 4-deoxy-4-fluoro-D-[1-14C]-mannose 6-phosphate and GDP-4-deoxy-4-fluoro-D-[1-14C]mannose. In addition, radioactive material was incorporated into a particulate fraction composed primarily of cell-wall polysaccharides. Compared with the 4-fluoro sugar, 3-deoxy-3-fluoro-D-[1-14C]mannose was not transported into yeast cells as well, and its conversion into sugar nucleotide was much less efficient. Metabolites that were isolated after incubation with the 3-fluoro analogue were identified as 3-deoxy-3-fluoro-D-[1-14C]mannose 1,6-bisphosphate, 3-deoxy-3-fluoro-D-[1-14C]mannose 6-phosphate and GDP-3-deoxy-3-fluoro-D-[1-14C]mannose. Little radioactivity was transferred into the cell-wall fraction.
- Published
- 1983
- Full Text
- View/download PDF
45. Sulphation by cultured cells. Cysteine, cysteinesulphinic acid and sulphite as sources for proteoglycan sulphate
- Author
-
Cynthia K. Silbert, D E Humphries, and Jeremiah E. Silbert
- Subjects
Electrophoresis ,inorganic chemicals ,Chromatography, Paper ,Disaccharides ,Sulfur Radioisotopes ,Tritium ,Biochemistry ,chemistry.chemical_compound ,Sulfation ,Glucosamine ,Sulfites ,Chondroitin ,Cysteine ,Molecular Biology ,Cells, Cultured ,Cysteine metabolism ,Neurotransmitter Agents ,integumentary system ,biology ,Chemistry ,Chondroitin Sulfates ,Cell Biology ,equipment and supplies ,Endothelial stem cell ,Proteoglycan ,Cell culture ,biology.protein ,Research Article - Abstract
Bovine aortic smooth-muscle cells, bovine aortic endothelial cells, and IMR-90 human embryonic lung fibroblasts were tested to determine their ability to use cysteine or cysteine metabolites as a source of sulphate (SO4). Cells were incubated in SO4-depleted medium containing [3H]glucosamine plus 0.2 mM-cystine, 0.3 mM-cysteinesulphinic acid or 0.3 mM-sulphite (SO3). The [3H]chondroitin sulphate produced by the different cells was found to vary considerably in degree of sulphation under these conditions. One line of smooth-muscle cells utilized cysteine effectively as a SO4 source and thus produced chondroitin sulphate which was highly sulphated. IMR-90 fibroblasts produced partly sulphated chondroitin sulphate under these conditions, while another smooth-muscle cell line could not utilize cysteine, but could utilize cysteinesulphinic acid as a partial SO4 source. In contrast with the above cells, endothelial cells could not use cysteine or cysteinesulphinic acid as a source of SO4 and produced chondroitin with almost no SO4. All of the cells were able to utilize SO3. Incubation of the cells in the SO4-depleted medium containing [35S]cysteine confirmed that only the first line of smooth-muscle cells could convert significant amounts of [35S]cysteine to 35SO4. Furthermore, the addition of 0.4 mM inorganic SO4 did not inhibit the production of SO4 from cysteine by these cells.
- Published
- 1988
- Full Text
- View/download PDF
46. The effect of acetyl-coenzyme A on phosphate-activated glutaminase from pig kidney and brain
- Author
-
Elling Kvamme and Ingeborg Aasland Torgner
- Subjects
Time Factors ,Chromatography, Paper ,Swine ,Biology ,Kidney ,Biochemistry ,Phosphates ,Enzyme activator ,chemistry.chemical_compound ,Glutaminase ,Acetyl Coenzyme A ,Centrifugation, Density Gradient ,medicine ,Animals ,Citrates ,Molecular Biology ,Binding Sites ,Amidohydrolase ,Activator (genetics) ,Brain ,Cell Biology ,Hydrogen-Ion Concentration ,NAD ,Phosphate ,Enzyme Activation ,Glutamine ,medicine.anatomical_structure ,chemistry ,Spectrophotometry ,Enzymology ,NAD+ kinase - Abstract
Phosphate-activated glutaminase (EC 3.5.1.2; l-glutamine amidohydrolase) purified from pig kidney and brain is activated by CoA and short-chain acyl-CoA derivatives. Acetyl-CoA is the most powerful activator (KA about 0.2mm). Acetyl-CoA is maximally effective in the absence of other activating anions such as phosphate and citrate, and at low glutamine concentrations. The negative co-operative substrate activation observed at pH7 becomes more pronounced in the presence of acetyl-CoA. Similarly to phosphate, acetyl-CoA produces at high protein concentrations a different type of activation, which is time-dependent, depends on protein concentration and is accompanied by an increase in the sedimentation coefficient. Acetyl-CoA, phosphate and citrate appear to have binding sites in common. No significant difference was observed between kidney and brain phosphate-activated glutaminase.
- Published
- 1974
- Full Text
- View/download PDF
47. Binding of β-lactam antibiotics to the exocellular <scp>dd</scp>-carboxypeptidase–transpeptidase of Streptomyces R39
- Author
-
Jean-Marie Frère, Jean-Marie Ghuysen, Peter E. Reynolds, Ramon Moreno, and Harold R. Perkins
- Subjects
medicine.drug_class ,Stereochemistry ,Sodium ,Cephalosporin ,chemistry.chemical_element ,Dithionitrobenzoic Acid ,Iodoacetates ,Carboxypeptidases ,Muramoylpentapeptide Carboxypeptidase ,Binding, Competitive ,Biochemistry ,Streptomyces ,Benzylpenicillin ,Hydrolysis ,chemistry.chemical_compound ,polycyclic compounds ,medicine ,Cephaloridine ,Electrophoresis, Paper ,Sodium dodecyl sulfate ,Molecular Biology ,chemistry.chemical_classification ,biology ,Circular Dichroism ,Sodium Dodecyl Sulfate ,Penicillin G ,Cell Biology ,Penicillinase ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Cephalosporins ,Molecular Weight ,Kinetics ,Spectrometry, Fluorescence ,Enzyme ,chemistry ,Enzymology ,Scintillation Counting ,Chromatography, Thin Layer ,Protein Binding ,medicine.drug - Abstract
Benzylpenicillin and cephaloridine reacted with the exocellular dd-carboxypeptidase-transpeptidase from Streptomyces R39 to form equimolar and inactive antibiotic-enzyme complexes. At saturation, the molar ratio of chromogenic cephalosporin 87-312 to enzyme was 1.3:1, but this discrepancy might be due to a lack of accuracy in the measurement of the antibiotic. Spectrophotometric studies showed that binding of cephaloridine and cephalosporin 87-312 to the enzyme caused opening of their beta-lactam rings. Benzylpenicillin and cephalosporin 87-312 competed for the same site on the free enzyme, suggesting that binding of benzylpenicillin also resulted in the opening of its beta-lactam ring. In Tris-NaCl-MgCl(2) buffer at pH7.7 and 37 degrees C, the rate constants for the dissociation of the antibiotic-enzyme complexes were 2.8x10(-6), 1.5x10(-6) and 0.63x10(-6)s(-1) (half-lives 70, 130 and 300h) for benzylpenicillin, cephalosporin 87-312 and cephaloridine respectively. During the process, the protein underwent reactivation. The enzyme that was regenerated from its complex with benzylpenicillin was as sensitive to fresh benzylpenicillin as the native enzyme. With [(14)C]benzylpenicillin, the released radioactive compound was neither benzylpenicillin nor benzylpenicilloic acid. The Streptomyces R39 enzyme thus behaved as a beta-lactam-antibiotic-destroying enzyme but did not function as a beta-lactamase. Incubation at 37 degrees C in 0.01m-phosphate buffer, pH7.0, and in the same buffer supplemented with sodium dodecyl sulphate caused a more rapid reversion of the [(14)C]benzylpenicillin-enzyme complex. The rate constants were 1.6x10(-5)s(-1) and 0.8x10(-4)s(-1) respectively. Under these conditions, however, there was no concomitant reactivation of the enzyme and the released radioactive compound(s) appeared not to be the same as before. The Streptomyces R39 enzyme and the exocellular dd-carboxypeptidase-transpeptidase from Streptomyces R61 appeared to differ from each other with regard to the topography of their penicillin-binding site.
- Published
- 1974
- Full Text
- View/download PDF
48. The action of nitrous acid on C-teichoic acid (C-substance) from the walls of Diplococcus pneumoniae
- Author
-
M. J. Watson and James Baddiley
- Subjects
inorganic chemicals ,Chromatography, Paper ,Carbohydrates ,Disaccharide ,Galactosamine ,Borohydrides ,Ribitol ,Borohydride ,Biochemistry ,Choline ,chemistry.chemical_compound ,Hydrolysis ,Cell Wall ,Organic chemistry ,Molecular Biology ,Nitrites ,Pentosephosphates ,Teichoic acid ,Nitrous acid ,Phosphomonoesterase ,Cell Biology ,Hydrogen-Ion Concentration ,Chromatography, Ion Exchange ,Phosphoric Monoester Hydrolases ,Teichoic Acids ,carbohydrates (lipids) ,Streptococcus pneumoniae ,chemistry ,Phosphodiester bond ,bacteria ,Oxidation-Reduction - Abstract
1. C-teichoic acid (C-substance) from the walls of Diplococcus pneumoniae contained free amino groups accessible to attack by nitrous acid. Treatment with nitrous acid, followed by reduction with borohydride and hydrolysis with acid, gave ribitol, glucitol and their respective phosphates. 2. Hydrolysis of the polymer with alkali followed by treatment of products with nitrous acid yielded glucose. 3. When alkali hydrolysis was followed by treatment with a phosphomonoesterase, nitrous acid degradation of C-substance yielded glucose and a disaccharide identified as 2-O-(N-acetylgalactosaminyl)-d-ribitol. 4. A partial structure for C-teichoic acid was deduced in which the order of the constituent residues and the position of phosphodiester linkages were established.
- Published
- 1974
- Full Text
- View/download PDF
49. Preparation of adenosine nucleotide derivatives suitable for affinity chromatography
- Author
-
Robin C. Bottomley, Ian P. Trayer, Hylary R. Trayer, and David A. P. Small
- Subjects
Adenosine monophosphate ,Stereochemistry ,Molecular Conformation ,Imides ,Ligands ,Biochemistry ,Pyrophosphate ,Chromatography, Affinity ,chemistry.chemical_compound ,Pyrophosphoric acid ,Adenosine Triphosphate ,Adenine nucleotide ,Organic chemistry ,Electrophoresis, Paper ,Phosphoric Acids ,Nucleotide ,Molecular Biology ,chemistry.chemical_classification ,Adenine Nucleotides ,Adenylyl Imidodiphosphate ,Phosphotransferases ,Cell Biology ,Adenosine Monophosphate ,Adenosine Diphosphate ,Models, Structural ,Adenosine diphosphate ,chemistry ,Chromatography, Gel ,Enzymology ,Spectrophotometry, Ultraviolet ,Oxidoreductases ,Adenosine triphosphate ,Protein Binding - Abstract
Methods of synthesizing a series of chemically-defined AMP, ADP, ATP, adenylyl imidodiphosphate and pyrophosphate derivatives suitable for affinity chromatography are extensively described. Each derivative has a single primary amino group at the end of a hexamethylene ‘spacer’ chain for attachment to CNBr-activated agarose. The synthesis of the derivative where the ‘spacer’ arm is attached directly to the 8 position of the adenine ring to produce 8-(6-aminohexyl)amino-AMP involves the direct bromination of AMP in the 8 position followed by displacement of the halogen by 1,6-diaminohexane. This monophosphate derivative can then be converted into the corresponding di- or triphosphate forms by direct phosphate condensation with carbonyl di-imidazole. A second series of adenosine phosphate derivatives with the phosphate moieties unsubstituted has been similarly prepared from N6-(6-aminohexyl)-AMP (Guilford et al., 1972). A third type of ligand has been synthesized by condensing the phosphoryl imidazolide of AMP with 6-aminohex-1-yl phosphate. This compound, P1-(6-aminohex-1-yl) P2-(5′-adenosyl) pyrophosphate, has an unsubstituted adenine ring. The synthesis of a fourth type of ligand, 6-aminohex-1-yl pyrophosphate, was done by heating 6-aminohexan-1-ol with crystalline pyrophosphoric acid under reduced pressure. The structures of the synthesized compounds were confirmed by chemical, electrophoretic and chromatographic methods and by u.v. spectrometry. The general applicability of the synthetic methods used is discussed in relation to the preparation of other affinity adsorbents. Examples are given where these derivatives have been successful in reversibly binding dehydrogenases, kinases and myosin and its proteolytic subfragments. The partial purification of rat liver glucokinase on an ADP derivative is shown.
- Published
- 1974
- Full Text
- View/download PDF
50. The effect of tsushimycin on the synthesis of lipid-linked saccharides in aorta
- Author
-
A D Elbein
- Subjects
Chromatography, Paper ,Swine ,medicine.drug_class ,Antibiotics ,Mannose ,Dolichyl pyrophosphate ,Peptides, Cyclic ,Biochemistry ,Acetylglucosamine ,Lipopeptides ,chemistry.chemical_compound ,medicine.artery ,medicine ,Animals ,Monosaccharide ,Polyisoprenyl Phosphate Sugars ,Molecular Biology ,Aorta ,chemistry.chemical_classification ,Polyisoprenyl Phosphate Monosaccharides ,Tsushimycin ,Cell Biology ,Oligosaccharide ,Anti-Bacterial Agents ,Kinetics ,Glucose ,Enzyme ,chemistry ,Peptides ,Dolichol Monophosphate Mannose ,Research Article - Abstract
The antibiotic, tsushimycin, inhibits the formation of dolichyl phosphate mannose, dolichyl phosphate glucose and dolichyl pyrophosphate N-acetylglucosamine in the particulate enzyme preparation from pig aorta. Although this antibiotic also inhibits the incorporation of mannose and glucose into lipid-linked oligosaccharides, these reactions are less sensitive to antibiotic than those involved in the synthesis of lipid-linked monosaccharides. In the presence of tsushimycin, most of the mannose incorporated into lipid-linked oligosaccharides is into one oligosaccharide that has the properties of the heptasaccharide Man5GlcNAc2, whereas in the absence of antibiotic most of the mannose is in larger-sized oligosaccharides. On the other hand, the glucose-labelled lipid-linked oligosaccharides appear to be similar in size in the presence or absence of antibiotic. Tsushimycin also inhibits the formation of lipid-linked monosaccharides by the solubilized enzyme preparation of aorta. Various concentrations of dolichyl phosphate or the detergent, Nonidet P40, had no effect on antibiotic inhibition. Some evidence indicates that tsushimycin binds to the particulate enzyme.
- Published
- 1981
- Full Text
- View/download PDF
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