1. Size-controlled nanopores in lipid membranes with stabilizing electric fields
- Author
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P. Thomas Vernier, Ramon Reigada, M. Laura Fernández, and Marcelo Risk
- Subjects
CIENCIAS MÉDICAS Y DE LA SALUD ,Field (physics) ,Lipid Bilayers ,Biophysics ,Nanotechnology ,Molecular Dynamics Simulation ,Biochemistry ,Molecular dynamics ,Nanopores ,Molecular level ,Electromagnetic Fields ,Electricity ,Electric field ,Lipid bilayer ,Molecular Biology ,STABLE SIZE-CONTROLLED PORES ,Chemistry ,Bilayer ,LIPID MEMBRANE ,Cell Biology ,Bioquímica y Biología Molecular ,ELECTRIC FIELD ,Medicina Básica ,Nanopore ,Membrane ,Chemical physics ,ELECTROPORATION ,MOLECULAR DYNAMICS - Abstract
Molecular dynamics (MD) has been shown to be a useful tool for unveiling many aspects of pore formation in lipid membranes under the influence of an applied electric field. However, the study of the structure and transport properties of electropores by means of MD has been hampered by difficulties in the maintenance of a stable electropore in the typically small simulated membrane patches. We describe a new simulation scheme in which an initially larger porating field is systematically reduced after pore formation to lower stabilizing values to produce stable, size-controlled electropores, which can then be characterized at the molecular level. A new method allows the three-dimensional modeling of the irregular shape of the pores obtained as well as the quantification of its volume. The size of the pore is a function of the value of the stabilizing field. At lower fields the pore disappears and the membrane recovers its normal shape, although in some cases long-lived, fragmented pores containing unusual lipid orientations in the bilayer are observed. Fil: Fernández, María Laura. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Computación; Argentina. Instituto Tecnológico de Buenos Aires; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Risk, Marcelo. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Computación; Argentina. Instituto Tecnológico de Buenos Aires; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Reigada, Ramon. Universidad de Barcelona; España Fil: Vernier, P. Thomas. University of Southern California; Estados Unidos
- Published
- 2012