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Crop homogenization in conventional agriculture has been pervasive while ecology has shown positive effects of biodiversity on ecosystem functioning, that arise from complementarity/facilitation and sampling/selection effects. These effects are well documented for interspecific diversity in both natural ecosystems and agroecosystems but remain less documented at an intraspecific level, particularly for the rates of nutrient uptake by plants and nutrient losses from ecosystems. We conducted a field experiment with 88 experimental plots cultivated with 1, 2, 4 or 8 wheat varieties and 1, 2, 3 or 4 functional groups to assess the effects of the number of varietal and functional diversity of winter wheat on plant biomass production, plant nutrient contents (N, Ca, Cu, Fe, Mg, Mn, P, K, Na and Zn) and fertilizer N recovery in the plant-soil system using a 15N labeling method. We found both negative and positive effects of the number of varieties or number of functional groups on shoot Cu, Fe, Zn, Na and P contents, but no significant effects of intraspecific diversity on biomass production, N content and 15N recovery in the plant-soil system. Our results show differential responses to an increase of intraspecific diversity of wheat on the contents of several essential nutrients in plants and highlight the need to jointly analyze multiple nutrients. Our study also suggests that increasing intraspecific diversity had no overall negative effects on biomass production or N content. Using knowledge on variety functional traits to target specific complementarity mechanisms when designing variety mixtures could thus lead to a positive effect on nutrient absorption and biomass production.