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The North Water Polynya is one of the most productive Arctic regions on Earth, sustaining the world's northernmost Inuit communities for millennia. The polynya is a large and persistent region of open water surrounded by sea ice and exhibits high primary productivity, is a biodiversity hotspot, and is a key habitat and migration corridor for Arctic species. Many aspects of the ecosystem structure and the role of resident species in the North Water Polynya remain uncertain. To shed light on these, we developed the first representation of the North Water Polynya food web using the Ecopath modelling framework. Modelled trophic flows indicated that pelagic and benthic communities were primarily connected by Age 1+ Arctic cod (Boreogadus saida), walrus (Odobenus rosmarus), and ringed seal (Pusa hispida). Large copepods, Age 1+ Arctic cod, and bivalves were key prey species. Overall productivity in the North Water Polynya was higher compared to Western Baffin Bay and Western Greenland, corroborating expectations of relatively high productivity within the polynya. This model provides a baseline description of the North Water Polynya ecosystem structure and function prior to future climate-driven food web changes and the emergence of large-scale commercial fisheries.