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We present a robust, compact, and transportable instrument that measures the iodine monoxide atmospheric radical at extremely low concentration, down to 40 ppqv (parts per quadrillion by volume, 1:1015). As nitrogen dioxide is strongly absorbed in the same spectral region it could be simultaneously measured down to 4 pptv (parts per trillion by volume, 1:1012). Relying on 'mode locked cavity-enhanced absorption spectroscopy,' the instrument makes use of a free-running commercial femtosecond Titane Saphir laser. We demonstrate that this multiplex detection scheme provides shot noise limited spectra for acquisition times as long as 5 min. Moreover, this instrument is very versatile as it can be potentially tuned from the infrared to the ultraviolet (1080-340 nm) to reach various molecular absorptions. It has been recently deployed at the Station Biologique de Roscoff on the North West Atlantic coast of France. [ABSTRACT FROM AUTHOR]