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Here, we present the manipulation of the crystal structure defects: an alternative route to reduce the lattice thermal conductivity (κL) on an atomic scale and improve the thermoelectric performance of CuGaTe2. This semiconductor with defects, represented by anion position displacement (u) and tetragonal deformation (η), generally gives low κL values when u and η distinctly deviate from 0.25 and 1 in the ideal zinc-blende structure, respectively. However, this semiconductor will show high Seebeck coefficients and low electrical conductivities when u and η are close to 0.25 and 1, respectively, due to the electrical inactivity caused by an attractive interaction between donor-acceptor defect pairs (GaCu2+ + 2VCu-). [ABSTRACT FROM AUTHOR]