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• A novel nonlinear impulsive time-delay system in fed-batch process is proposed. • The robust parameter identification problem is presented to determine the optimal parameters. • A parallel particle swarm optimization algorithm is developed to solve the identification problem. In this paper, taking the feeding process as an impulsive form and considering the time-delay in fermentation process, we propose a nonlinear impulsive time-delay system to formulate the fed-batch culture in microbial 1,3-propanediol production. For this system, we discuss some important properties of the solution. To determine the optimal time-delay and kinetic parameters in the system, we then present a robust parameter identification model subject to continuous state inequality constraints. By the constraint transcription technique and a penalty method, we transform the robust parameter identification problem to a sequence of optimization problems with only box constraints. On this basis, we propose a parallel Particle Swarm Optimization algorithm to solve the resulting problem. Finally, the numerical results show that the impulsive time-delay system can well describe the fed-batch process and the developed algorithm is highly effective. [ABSTRACT FROM AUTHOR]