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The ever-increasing challenges related to water security and climate mitigation underscore the pressing need for forward-thinking systems planning tools to drive urban sustainability transitions. In this study, we propose a novel city-level multi-objective planning framework that explores the nexus between carbon trading and water management, with the aim of facilitating water-efficient urban industrial restructuring. The framework integrates cap-and-trade mechanisms into a two-layered optimization model, creating an integrated approach to optimizing carbon emissions and generating economic opportunities for improving water efficiency. To illustrate the potential application of this framework, we conducted a case study focusing on Dongguan City, a water-stressed industrial metropolis in southern China. The results illustrate potential synergies between water planning strategies and carbon trading schemes, which could be harnessed to enable targeted reductions in water usage and carbon emissions. Furthermore, our findings identify the textile, apparel, and paper products manufacturing industries as primary candidates for strategic production scale reduction, emphasizing the importance of sustained support for the development of the computer and electronic manufacturing sector as a catalyst for urban sustainability transitions. By pioneering this new nexus-based perspective, our study offers valuable insights into long-term strategic planning for a low-carbon and resource-efficient urban economy. • Synergizing carbon trading and water management within a novel integrated planning framework. • Implementing resource-efficiency-driven optimization for water- and carbon-intensive manufacturing sectors. • Gaining insights into the specific roles of key manufacturing sectors in water management and carbon trading. • Introducing carbon trading systems may help in promoting water-efficient industrial restructuring. [Display omitted] [ABSTRACT FROM AUTHOR]