1. Description of desferrioxamine-producing bacterium Chitinophaga agrisoli sp. nov., isolated from soil
- Author
-
Dong-Jin Park, Chun-Zhi Jin, Long Jin, Min-Jiao Liu, Dong Hyo Kang, Chang-Jin Kim, and Jong Min Lee
- Subjects
DNA, Bacterial ,0106 biological sciences ,0301 basic medicine ,Deferoxamine ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,Agar plate ,Soil ,03 medical and health sciences ,RNA, Ribosomal, 16S ,Molecular Biology ,Gene ,Phylogeny ,Soil Microbiology ,Whole genome sequencing ,Phylogenetic tree ,biology ,Strain (chemistry) ,Bacteroidetes ,Chemistry ,Fatty Acids ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,genomic DNA ,030104 developmental biology ,Bacteria - Abstract
A Gram-stain-negative, non-motile, yellow-pigmented and non-spore forming rod-shaped bacterium, designated strain BN140078T, was isolated from farmland soil, Chungbuk, Republic of Korea. It was able to grow aerobically at 10–40 °C (optimum 28 °C), pH 5.5–7.5 (optimum pH 7.0) and with 0–2.0% (w/v) NaCl concentration (optimum 1.0%) on Reasoner’s 2A (R2A) agar medium. Comparative 16S rRNA gene sequence analysis showed that the strain BN140078T had 96.9%, 96.5% and 96.1% 16S rRNA gene similarities with Chitinophaga ginsengihumi KACC 17604T, Chitinophaga rupis KACC 14521T and Chitinophaga japonensis KACC 12057T, respectively. The predominant respiratory quinone was menaquinone MK-7 and the major fatty acids (≥ 5%) were C16:1 ω5c, iso-C15:0, iso-C17:0 3-OH and Summed Feature 3 (C16:1 ω7c and/or C16:1 ω6c). The polar lipids were composed of phosphatidylethanolamine, four unidentified amino lipids and six unidentified lipids. The genomic DNA G+C content was 49.5 mol%. The genome of strain BN140078T comprises a number of biosynthetic gene clusters for secondary metabolites, in particular those for non-ribosomal peptide products. The polyphasic taxonomic study clearly distinguished this strain from its closest phylogenetic neighbors. Thus, we propose that the BN140078T represents a novel species of the genus Chitinophaga, for which the name Chitinophaga agrisoli sp. nov. was proposed. The type strain is BN140078T (=KCTC 62555T = CCTCC AB 2018162T).
- Published
- 2021
- Full Text
- View/download PDF