1. Application of a Natural Language Processing Algorithm to Asthma Ascertainment. An Automated Chart Review.
- Author
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Wi CI, Sohn S, Rolfes MC, Seabright A, Ryu E, Voge G, Bachman KA, Park MA, Kita H, Croghan IT, Liu H, and Juhn YJ
- Subjects
- Adolescent, Child, Child, Preschool, Cohort Studies, Female, Humans, Male, Minnesota epidemiology, Prevalence, Reproducibility of Results, Retrospective Studies, Risk Factors, Sensitivity and Specificity, Asthma epidemiology, Electronic Health Records statistics & numerical data, Natural Language Processing
- Abstract
Rationale: Difficulty of asthma ascertainment and its associated methodologic heterogeneity have created significant barriers to asthma care and research., Objectives: We evaluated the validity of an existing natural language processing (NLP) algorithm for asthma criteria to enable an automated chart review using electronic medical records (EMRs)., Methods: The study was designed as a retrospective birth cohort study using a random sample of 500 subjects from the 1997-2007 Mayo Birth Cohort who were born at Mayo Clinic and enrolled in primary pediatric care at Mayo Clinic Rochester. Performance of NLP-based asthma ascertainment using predetermined asthma criteria was assessed by determining both criterion validity (chart review of EMRs by abstractor as a gold standard) and construct validity (association with known risk factors for asthma, such as allergic rhinitis)., Measurements and Main Results: After excluding three subjects whose respiratory symptoms could be attributed to other conditions (e.g., tracheomalacia), among the remaining eligible 497 subjects, 51% were male, 77% white persons, and the median age at last follow-up date was 11.5 years. The asthma prevalence was 31% in the study cohort. Sensitivity, specificity, positive predictive value, and negative predictive value for NLP algorithm in predicting asthma status were 97%, 95%, 90%, and 98%, respectively. The risk factors for asthma (e.g., allergic rhinitis) that were identified either by NLP or the abstractor were the same., Conclusions: Asthma ascertainment through NLP should be considered in the era of EMRs because it can enable large-scale clinical studies in a more time-efficient manner and improve the recognition and care of childhood asthma in practice.
- Published
- 2017
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