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Ancient DNA recovered from 57 individuals excavated by Hiram Bingham at the rural communities of Paucarcancha, Patallacta, and Huata near the famed Inca royal estate and ritual site of Machu Picchu was analyzed by polymerase chain reaction, and the results were compared with ancient and modern DNA from various Central Andean areas to test their hypothesized indigenous highland origins. The control and coding regions of the mitochondrial DNA (mtDNA) of 35 individuals in this group were sequenced, and the haplogroups of each individual were determined. The frequency data for the haplogroups of these samples show clear proximity to those of modern Quechua and Aymara populations in the Peruvian and Bolivian highlands, and contrast with those of pre-Hispanic individuals of the north coast of Peru that we defined previously. Our study suggests a strong genetic affinity between sampled late pre-Hispanic individuals and modern Andean highlanders. A previous analysis of the Machu Picchu osteological collection suggests that the residents there were a mixed group of natives from various coastal and highland regions relocated by the Inca state for varied purposes. Overall, our study indicates that the sampled individuals from Paucarcancha and Patallacta were indigenous highlanders who provided supportive roles for nearby Machu Picchu. KEY WORDS Inca; ancient DNA; Urubamba; Peru

Within and between tombs at the 1,000-year-old site of Huaca Loro on north coastal Peru, interment characteristics vary to an intriguing degree. Following and elaborating upon prior intracemetery studies, biological relatedness among associated burial groupings was assessed using 23 dental characters (assuming familial allele segregation) for 29 individuals. Biological patterning was based on multivariate distance between individuals using all traits, rather than the previously widespread reliance upon univariate, comparison of each trait separately within samples. This multivariate approach did seem more informative. Statistically significant variation of biological similarities and dissimilarities corresponded to spatial groupings and also to various specific archaeological indications of the cohesiveness, or lack thereof, of interment pattern. The partition of biological distances among tombs at Huaca Loro supports the archaeological evidence that the tombs represent a planned elite cemetery. Am J Phys Anthropol 117:113-121, 2002. KEY WORDS odontology; intracemetery; multivariate; bootstrap