9 results on '"germplasm bank"'
Search Results
2. PGRFA Management of Outcrossing Plants Propagated by Seed: From On-Farm to Ex Situ Conservation and Some Italian Maize Case Studies
- Author
-
Michela Landoni, Anna Bertoncini, Martina Ghidoli, Graziano Rossi, Elena Cassani, Sabrina Locatelli, Carlotta Balconi, and Roberto Pilu
- Subjects
PGRFA ,ex situ conservation ,in situ conservation ,germplasm bank ,allogamous plants ,controlled pollination ,Agriculture - Abstract
In this review, the main issues related to the conservation and valorization of Plant Genetic Resources for Food and Agriculture (PGRFA) will be primarily addressed. The conservation of PGRFA concerning outcrossing plants poses a significant challenge. For this reason, this review will cover the key challenges related to all stages, starting from in situ sampling, collection in the germplasm bank, and conservative reproductive methods. Integrated approaches involving the combined use of classical and molecular techniques will be described for the characterization of accessions. Within this framework, some successful Italian case studies focused on maize will be reported as well.
- Published
- 2024
- Full Text
- View/download PDF
3. Evaluating the Diversity of Ecotypes of Red Clover (Trifolium pratense L.) from Northwestern Spain by Phenotypic Traits and Microsatellites
- Author
-
Cristina Isabel Fernández-Otero, Ana María Ramos-Cabrer, Julio Enrique López-Díaz, and Santiago Pereira-Lorenzo
- Subjects
simple sequence repeats (SSRs) ,variability ,morphology ,local cultivars ,germplasm bank ,Agriculture - Abstract
For more than 50 years, the CIAM-AGACAL (Agricultural Research Centre of Mabegondo, Xunta de Galicia, A Coruña, Spain) has been carrying out the important task of conserving the phytogenetic resources of ecotypes and natural populations of grassland species from northwestern Spain. The CIAM-AGACAL’s germplasm bank has 57 populations of red clover (Trifolium pratense Lam.), one of the most cultivated forage legumes in the world. The goal of the present study was to evaluate the diversity among cultivars and natural clover populations at morphological and molecular level. Twelve polymorphic SSR loci revealed 241 microsatellite alleles with an average of 20.08 alleles per locus. Two main groups were detected by the Structure software, one of them including local populations and the second clustering cultivars and related populations. Intra-specific variability was found among cultivars and natural populations. A moderate genetic differentiation of Spanish red clover cultivars was observed (Fst = 0.08) between the two main clusters. Finally, a certain relationship between phenotypic and genotypic variation was detected.
- Published
- 2021
- Full Text
- View/download PDF
4. Phenotypic and Molecular Characterization of Brazilian Capsicum Germplasm
- Author
-
Bruna Dias Gomes Brilhante, Talles de Oliveira Santos, Pedro Henrique Araújo Diniz Santos, Samuel Henrique Kamphorst, José Dias Souza Neto, Leandro Heitor Rangel, Fernanda Vargas Valadares, Rafael Nunes de Almeida, Rosana Rodrigues, Alexandre Cristiano Santos Júnior, and Monique Moreira Moulin
- Subjects
peppers ,genetic resources ,germplasm bank ,molecular markers ,Agriculture - Abstract
Population growth and the high demand for food production has caused environmental degradation losses in biodiversity. The conservation of genetic resources is the most appropriate strategy for maintaining the variability of species of great importance, such as Capsicum. In this study, we describe the characterization of 69 pepper accessions of four Capsicum species from different regions of Brazil on the basis of qualitative and quantitative descriptors and ISSR markers. The 11 quantitative descriptors grouped the 69 populations into five clades. The fruit traits had the greater discrimination power. A strong correlation was detected between some pairs of quantitative descriptors: petiole and fruit length, fruit diameter and fresh fruit mass, leaf length and leaf width, canopy and plant height, stem diameter and plant height, stem diameter and canopy diameter. A negative correlation was also observed between plant height and pericarp thickness. Moreover, the molecular analysis grouped accessions into five clades. The morpho-agronomic and molecular characterization were efficient to estimate the genetic diversity between accessions, being important tools for the knowledge and use of accessions. This study is of great importance to preserve pepper germplasm and to provide data to facilitate the process of the selection in breeding programs.
- Published
- 2021
- Full Text
- View/download PDF
5. Evaluating the Diversity of Ecotypes of Red Clover (Trifolium pratense L.) from Northwestern Spain by Phenotypic Traits and Microsatellites
- Author
-
Santiago Pereira-Lorenzo, Cristina Isabel Fernández-Otero, Ana María Ramos-Cabrer, and Julio Enrique López-Díaz
- Subjects
Ecotype ,variability ,Locus (genetics) ,Agriculture ,Phenotypic trait ,Biology ,Red Clover ,Agronomy ,germplasm bank ,Genotype ,morphology ,Microsatellite ,Cultivar ,Allele ,simple sequence repeats (SSRs) ,Agronomy and Crop Science ,local cultivars - Abstract
For more than 50 years, the CIAM-AGACAL (Agricultural Research Centre of Mabegondo, Xunta de Galicia, A Coruña, Spain) has been carrying out the important task of conserving the phytogenetic resources of ecotypes and natural populations of grassland species from northwestern Spain. The CIAM-AGACAL’s germplasm bank has 57 populations of red clover (Trifolium pratense Lam.), one of the most cultivated forage legumes in the world. The goal of the present study was to evaluate the diversity among cultivars and natural clover populations at morphological and molecular level. Twelve polymorphic SSR loci revealed 241 microsatellite alleles with an average of 20.08 alleles per locus. Two main groups were detected by the Structure software, one of them including local populations and the second clustering cultivars and related populations. Intra-specific variability was found among cultivars and natural populations. A moderate genetic differentiation of Spanish red clover cultivars was observed (Fst = 0.08) between the two main clusters. Finally, a certain relationship between phenotypic and genotypic variation was detected.
- Published
- 2021
6. Phenotypic and Molecular Characterization of Brazilian Capsicum Germplasm
- Author
-
José Dias de Souza Neto, Pedro Henrique Araújo Diniz Santos, Bruna Dias Gomes Brilhante, Fernanda Vargas Valadares, Rosana Rodrigues, Monique Moreira Moulin, Leandro Heitor Rangel, Alexandre Cristiano Santos Júnior, Talles de Oliveira Santos, Rafael Nunes de Almeida, and Samuel Henrique Kamphorst
- Subjects
0106 biological sciences ,Germplasm ,Canopy ,Genetic diversity ,molecular markers ,fungi ,Biodiversity ,food and beverages ,Agriculture ,04 agricultural and veterinary sciences ,Biology ,peppers ,01 natural sciences ,Phenotype ,Petiole (botany) ,Horticulture ,genetic resources ,germplasm bank ,Pepper ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Agronomy and Crop Science ,Selection (genetic algorithm) ,010606 plant biology & botany - Abstract
Population growth and the high demand for food production has caused environmental degradation losses in biodiversity. The conservation of genetic resources is the most appropriate strategy for maintaining the variability of species of great importance, such as Capsicum. In this study, we describe the characterization of 69 pepper accessions of four Capsicum species from different regions of Brazil on the basis of qualitative and quantitative descriptors and ISSR markers. The 11 quantitative descriptors grouped the 69 populations into five clades. The fruit traits had the greater discrimination power. A strong correlation was detected between some pairs of quantitative descriptors: petiole and fruit length, fruit diameter and fresh fruit mass, leaf length and leaf width, canopy and plant height, stem diameter and plant height, stem diameter and canopy diameter. A negative correlation was also observed between plant height and pericarp thickness. Moreover, the molecular analysis grouped accessions into five clades. The morpho-agronomic and molecular characterization were efficient to estimate the genetic diversity between accessions, being important tools for the knowledge and use of accessions. This study is of great importance to preserve pepper germplasm and to provide data to facilitate the process of the selection in breeding programs.
- Published
- 2021
7. Evaluating the Diversity of Ecotypes of Red Clover (Trifolium pratense L.) from Northwestern Spain by Phenotypic Traits and Microsatellites.
- Author
-
Fernández-Otero, Cristina Isabel, Ramos-Cabrer, Ana María, López-Díaz, Julio Enrique, and Pereira-Lorenzo, Santiago
- Subjects
- *
PHENOTYPES , *RED clover , *LOCUS (Genetics) , *MICROSATELLITE repeats , *PHENOTYPIC plasticity , *NATURAL resources , *LEGUMES - Abstract
For more than 50 years, the CIAM-AGACAL (Agricultural Research Centre of Mabegondo, Xunta de Galicia, A Coruña, Spain) has been carrying out the important task of conserving the phytogenetic resources of ecotypes and natural populations of grassland species from northwestern Spain. The CIAM-AGACAL's germplasm bank has 57 populations of red clover (Trifolium pratense Lam.), one of the most cultivated forage legumes in the world. The goal of the present study was to evaluate the diversity among cultivars and natural clover populations at morphological and molecular level. Twelve polymorphic SSR loci revealed 241 microsatellite alleles with an average of 20.08 alleles per locus. Two main groups were detected by the Structure software, one of them including local populations and the second clustering cultivars and related populations. Intra-specific variability was found among cultivars and natural populations. A moderate genetic differentiation of Spanish red clover cultivars was observed (Fst = 0.08) between the two main clusters. Finally, a certain relationship between phenotypic and genotypic variation was detected. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
8. Behavior of Ten Coffee Cultivars against Hemileia vastatrix in San Ramón (Chanchamayo, Peru)
- Author
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Luz Gómez-Pando, Leonel Alvarado-Huamán, Viviana Castro-Cepero, Alberto Julca-Otiniano, Ricardo Borjas-Ventura, and Diana Rebaza-Fernández
- Subjects
0106 biological sciences ,Hemileia vastatrix ,0303 health sciences ,biology ,Inga ,Germplasm Bank ,lcsh:S ,severity ,Maragogype ,biology.organism_classification ,coffee rust ,01 natural sciences ,lcsh:Agriculture ,03 medical and health sciences ,Horticulture ,Regional development ,Peru ,Statistical analysis ,Upper third ,Cultivar ,High severity ,Agronomy and Crop Science ,Pacamara ,030304 developmental biology ,010606 plant biology & botany - Abstract
The objective of this research was to know the behavior of ten coffee cultivars against Hemileia vastatrix in San Ramó, n (Chanchamayo, Peru). The test was carried out from April 2017 to March 2018 at the Coffee Germplasm Bank, at the Regional Development Institute &ldquo, La Gé, nova&rdquo, (San Ramó, n, Chanchamayo) of La Molina National Agrarian University. 10 cultivars were selected (Catimor, Pache, Mundo Novo, Pacamara, Caturra, Catuaí, Bourbon, Typica, Maragogype and Geisha), each one with 5 plants (2 ×, 1 m) of seven years of age, installed under the shade of trees of Inga sp. (12 ×, 12 m). For the statistical analysis, it was worked as a Completely Random Design, considering each cultivar as a treatment and each plant as a repetition. The severity was evaluated throughout a year, in the lower, middle and upper third of each plant, using a graphic scale. For the months with high severity, a comparison of means obtained in each third of the plant and for each variety was made. Then, the severity means obtained in each cultivar were compared. The results showed that the severity was different in each of the ten cultivars evaluated. Throughout the year, the highest severity values corresponded to the months of April, May and June 2017. The severity was greater in the lower third and was decreasing until the upper third of the plant, presenting statistically significant differences. Maragogype, presented the highest severity (15.9%) and Pacamara the lowest (1.3%), values that were also statistically different.
- Published
- 2020
- Full Text
- View/download PDF
9. Phenotypic and Molecular Characterization of Brazilian Capsicum Germplasm.
- Author
-
Brilhante, Bruna Dias Gomes, Santos, Talles de Oliveira, Santos, Pedro Henrique Araújo Diniz, Kamphorst, Samuel Henrique, Neto, José Dias Souza, Rangel, Leandro Heitor, Valadares, Fernanda Vargas, de Almeida, Rafael Nunes, Rodrigues, Rosana, Júnior, Alexandre Cristiano Santos, Moulin, Monique Moreira, and Boscaiu, Monica
- Subjects
- *
PEPPERS , *GERMPLASM conservation , *GERMPLASM , *PHENOTYPES , *GENETIC variation , *PLANT canopies , *FRUIT yield , *GENETIC markers in plants - Abstract
Population growth and the high demand for food production has caused environmental degradation losses in biodiversity. The conservation of genetic resources is the most appropriate strategy for maintaining the variability of species of great importance, such as Capsicum. In this study, we describe the characterization of 69 pepper accessions of four Capsicum species from different regions of Brazil on the basis of qualitative and quantitative descriptors and ISSR markers. The 11 quantitative descriptors grouped the 69 populations into five clades. The fruit traits had the greater discrimination power. A strong correlation was detected between some pairs of quantitative descriptors: petiole and fruit length, fruit diameter and fresh fruit mass, leaf length and leaf width, canopy and plant height, stem diameter and plant height, stem diameter and canopy diameter. A negative correlation was also observed between plant height and pericarp thickness. Moreover, the molecular analysis grouped accessions into five clades. The morpho-agronomic and molecular characterization were efficient to estimate the genetic diversity between accessions, being important tools for the knowledge and use of accessions. This study is of great importance to preserve pepper germplasm and to provide data to facilitate the process of the selection in breeding programs. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
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