1. Mapping circulating serum miRNAs to their immune-related target mRNAs
- Author
-
Alexis Vandenbon, Edward Wijaya, Diego Diez, Daron M. Standley, Shunsuke Teraguchi, Joel Billaud, Ken Ishii, and Bakhtiyor Nosirov
- Subjects
Messenger RNA ,animal diseases ,MiRNA binding ,chemical and pharmacologic phenomena ,posttranscriptional regulation ,target prediction ,Biology ,biochemical phenomena, metabolism, and nutrition ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Biochemistry ,Original research ,Computer Science Applications ,Cell biology ,Immune system ,Chemistry (miscellaneous) ,Advances and Applications in Bioinformatics and Chemistry ,microRNA ,Biomarker (medicine) ,bacteria ,biomarker ,Binding site ,Serum mirna ,random forest ,Original Research - Abstract
Purpose: Evidence suggests that circulating serum microRNAs (miRNAs) might preferentially target immune-related mRNAs. If this were the case, we hypothesized that immune-related mRNAs would have more predicted serum miRNA binding sites than other mRNAs and, reciprocally, that serum miRNAs would have more immune-related mRNA targets than non-serum miRNAs., Materials and Methods: We developed a consensus target predictor using the random forest framework and calculated the number of predicted miRNA–mRNA interactions in various subsets of miRNAs (serum, non-serum) and mRNAs (immune related, nonimmune related)., Results: Immune-related mRNAs were predicted to be targeted by serum miRNA more than other mRNAs. Moreover, serum miRNAs were predicted to target many more immune-related mRNA targets than non-serum miRNAs; however, these two biases in immune-related mRNAs and serum miRNAs appear to be completely independent., Conclusion: Immune-related mRNAs have more miRNA binding sites in general, not just for serum miRNAs; likewise, serum miRNAs target many more mRNAs than non-serum miRNAs overall, regardless of whether they are immune related or not. Nevertheless, these two independent phenomena result in a significantly larger number of predicted serum miRNA–immune mRNA interactions than would be expected by chance.
- Published
- 2017