Precise and appropriate management of farmland for a cotton crop to reach the highest water use efficiency with a low water supply and an acceptable yield is required in arid- and semiarid regions. This study in Iran aimed to find the most appropriate concentration of jasmonic acid (JA) and the best stage for application to cope with any negative impacts of water deficit stress. A split-plot factorial experiment based on a randomized complete block design with three replications was used in 2 consecutive years (2016-2017). Two irrigation intervals of 10 and 20 days were used, with four concentrations of JA (0, 25, 50, and 100 mg L-1) and applications at three crop stages (vegetative, reproductive, and vegetative and reproductive together). The final results showed that the 20-day interval significantly decreased relative water content, the quantity of cotton, cotton yield and its related traits including boll number per plant, the 1,000-seed weight, seed cotton yield, lint yield, and lint percentage. It also increased the content of proline and soluble sugars. The 50-mg L-1 concentration of JA applied at the vegetative-reproductive stages appropriately mitigated the negative effects of water deficit. These results are of practical application for farmers in arid- and semiarid regions with low water supply when irrigating cotton lands in order to reach an acceptable cotton yield. [ABSTRACT FROM AUTHOR]