1. Targeted Genome Sequencing Identifies Multiple Rare Variants in Caveolin-1 Associated with Obstructive Sleep Apnea.
- Author
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Liang, Jingjing, Wang, Heming, Cade, Brian E, Kurniansyah, Nuzulul, He, Karen Y, Lee, Jiwon, Sands, Scott A, A Brody, Jennifer, Chen, Han, Gottlieb, Daniel J, Evans, Daniel S, Guo, Xiuqing, Gharib, Sina A, Hale, Lauren, Hillman, David R, Lutsey, Pamela L, Mukherjee, Sutapa, Ochs-Balcom, Heather M, Palmer, Lyle J, Purcell, Shaun, Saxena, Richa, Patel, Sanjay R, Stone, Katie L, Tranah, Gregory J, Boerwinkle, Eric, Lin, Xihong, Liu, Yongmei, Psaty, Bruce M, Vasan, Ramachandran S, Manichaikul, Ani, Rich, Stephen S, Rotter, Jerome I, Sofer, Tamar, Redline, Susan, and Zhu, Xiaofeng
- Subjects
Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Sleep Research ,Precision Medicine ,Minority Health ,Human Genome ,Cardiovascular ,Lung ,Clinical Research ,Biotechnology ,Genetics ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Humans ,Caveolin 1 ,Sleep Apnea ,Obstructive ,Sequence Analysis ,DNA ,High-Throughput Nucleotide Sequencing ,obstructive sleep apnea ,caveolin-1 ,apnea-hypopnea index ,genetic association analysis ,rare variants ,TOPMed Sleep Working Group ,apnea–hypopnea index ,Medical and Health Sciences ,Respiratory System ,Cardiovascular medicine and haematology ,Clinical sciences - Abstract
Rationale: Obstructive sleep apnea (OSA) is a common disorder associated with increased risk for cardiovascular disease, diabetes, and premature mortality. There is strong clinical and epidemiologic evidence supporting the importance of genetic factors influencing OSA but limited data implicating specific genes. Objectives: To search for rare variants contributing to OSA severity. Methods: Leveraging high-depth genomic sequencing data from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program and imputed genotype data from multiple population-based studies, we performed linkage analysis in the CFS (Cleveland Family Study), followed by multistage gene-based association analyses in independent cohorts for apnea-hypopnea index (AHI) in a total of 7,708 individuals of European ancestry. Measurements and Main Results: Linkage analysis in the CFS identified a suggestive linkage peak on chromosome 7q31 (LOD = 2.31). Gene-based analysis identified 21 noncoding rare variants in CAV1 (Caveolin-1) associated with lower AHI after accounting for multiple comparisons (P = 7.4 × 10-8). These noncoding variants together significantly contributed to the linkage evidence (P
- Published
- 2022