1. Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development
- Author
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Darbellay, Fabrice, Ramisch, Anna, Lopez-Delisle, Lucille, Kosicki, Michael, Rauseo, Antonella, Jouini, Zahra, Visel, Axel, and Andrey, Guillaume
- Subjects
Biological Sciences ,Genetics ,Human Genome ,Pediatric ,Congenital Structural Anomalies ,Arthritis ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Musculoskeletal ,Animals ,Enhancer Elements ,Genetic ,Humans ,Chondrocytes ,Mice ,Chondrogenesis ,Receptor ,Fibroblast Growth Factor ,Type 3 ,Collagen Type II ,Gene Expression Regulation ,Developmental ,Bone Development ,Extremities ,Male ,Cell Differentiation ,Transcription Factors ,Female - Abstract
Chondrocyte differentiation controls skeleton development and stature. Here we provide a comprehensive map of chondrocyte-specific enhancers and show that they provide a mechanistic framework through which non-coding genetic variants can influence skeletal development and human stature. Working with fetal chondrocytes isolated from mice bearing a Col2a1 fluorescent regulatory sensor, we identify 780 genes and 2'704 putative enhancers specifically active in chondrocytes using a combination of RNA-seq, ATAC-seq and H3K27ac ChIP-seq. Most of these enhancers (74%) show pan-chondrogenic activity, with smaller populations being restricted to limb (18%) or trunk (8%) chondrocytes only. Notably, genetic variations overlapping these enhancers better explain height differences than those overlapping non-chondrogenic enhancers. Finally, targeted deletions of identified enhancers at the Fgfr3, Col2a1, Hhip and, Nkx3-2 loci confirm their role in regulating cognate genes. This enhancer map provides a framework for understanding how genes and non-coding variations influence bone development and diseases.
- Published
- 2024