41 results on '"Mark A. Ragan"'
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2. Towards a Large Integrated Model of Signal Transduction and Gene Regulation Events in Mammalian Cells.
3. Breast cancer classification: linking molecular mechanisms to disease prognosis.
4. Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats.
5. Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions.
6. MACHOS: Markov clusters of homologous subsequences.
7. Connected Coloring Completion for General Graphs: Algorithms and Complexity.
8. Quadratic Kernelization for Convex Recoloring of Trees.
9. Kernelization for Convex Recoloring.
10. Characterizing cancer subtypes as attractors of Hopfield networks.
11. Evolution and Controllability of CancerNetworks: A Boolean Perspective.
12. Extracting reaction networks from databases-opening Pandora's box.
13. Supervised, semi-supervised and unsupervised inference of gene regulatory networks.
14. Systematic tracking of dysregulated modules identifies novel genes in cancer.
15. Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling.
16. Gene Ontology-driven inference of protein-protein interactions using inducers.
17. Quadratic Kernelization for Convex Recoloring of Trees.
18. A visual framework for sequence analysis using n-grams and spectral rearrangement.
19. A Semantic Web Ontology for Small Molecules and Their Biological Targets.
20. A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats.
21. A two-phase strategy for detecting recombination in nucleotide sequences.
22. Advanced computing for systems biology.
23. A word-oriented approach to alignment validation.
24. IllouraTM: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data.
25. Computing Pathways to Systems Biology: Key Contributions of Computational Methods in Pathway Identification
26. Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations.
27. Genome-Scale Computational Biology and Bioinformatics in Australia.
28. The Visible Cell Project: Changing the Way We Think about Cells.
29. Seevolution: visualizing chromosome evolution.
30. Automating the Search for Lateral Gene Transfer.
31. Complex-based analysis of dysregulated cellular processes in cancer.
32. Clustering evolving proteins into homologous families.
33. RMaNI: Regulatory Module Network Inference framework.
34. mCOPA: analysis of heterogeneous features in cancer expression data.
35. Automatic, context-specific generation of Gene Ontology slims.
36. Protein-protein interaction as a predictor of subcellular location.
37. The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case.
38. Detecting recombination in evolving nucleotide sequences.
39. Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
40. A hybrid clustering approach to recognition of protein families in 114 microbial genomes.
41. Nucleotide sequences of 18S ribosomal RNA genes from the red algae Gracilaria tikvahiae McLachlan, Gracilaria verrucosa (Hudson) Papenfuss and Gracilariopsis sp.
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