209 results on '"Pastor, Richard W."'
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2. Flipped C-Terminal Ends of apoA1 Promote ABCA1-Dependent Cholesterol Efflux by Small HDLs
3. Spontaneous curvature generation by peptides in asymmetric bilayers
4. Flipped C-Terminal Ends of APOA1 Promote ABCA1-dependent Cholesterol Efflux by Small HDLs
5. Determination of Chain Conformations in the Membrane Interior by Brownian Dynamics Simulations
6. Short hydrocarbon stapled ApoC2-mimetic peptides activate lipoprotein lipase and lower plasma triglycerides in mice
7. Unsaturated Lipids Facilitate Partitioning of Transmembrane Peptides into the Liquid Ordered Phase
8. Drude Polarizable Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for Saturated and Monounsaturated Zwitterionic Lipids
9. Surface viscosities of lipid bilayers determined from equilibrium molecular dynamics simulations
10. Special issue for Klaus Gawrisch
11. Development of CHARMM additive potential energy parameters for α-methyl amino acids
12. Model predictions for PIP2 raft formation
13. Planar aggregation of the influenza viral fusion peptide alters membrane structure and hydration, promoting poration
14. Initiation and evolution of pores formed by influenza fusion peptides probed by lysolipid inclusion
15. Finite-Size Effects in Simulations of Peptide/Lipid Assembly
16. Design principles of PI(4,5)P 2 clustering under protein-free conditions: Specific cation effects and calcium-potassium synergy
17. Developing initial conditions for simulations of asymmetric membranes: a practical recommendation
18. Developing initial conditions for simulations of asymmetric membranes: a practical recommendation
19. Development of CHARMM Additive Potential Energy Parameters for α-Methyl Amino Acids
20. Planar aggregation of the influenza viral fusion peptide alters membrane structure and hydration, promoting poration
21. CHAPTER 2. Combining NMR Spectroscopic Measurements and Molecular Dynamics Simulations to Determine the Orientation of Amphipathic Peptides in Lipid Bilayers
22. Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers Using Site Identification by Ligand Competitive Saturation
23. Location and Conformational Ensemble of Menaquinone and Menaquinol, and Protein–Lipid Modulations in Archaeal Membranes
24. CHARMM36 Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for Phosphatidylethanolamine, Phosphatidylglycerol, and Ether Lipids
25. Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion
26. Recent Updates to the Charmm Lipid Force Fields
27. Simulation of the Influenza Fusion Peptide Pre-Pore Structure
28. Chapter 1 Considerations for Lipid Force Field Development
29. CHARMM36 Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for PE, PG, and Ether Lipids
30. CHARMM36 Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for PE, PG, and Ether Lipids
31. Semi-Automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion
32. Semi-Automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion
33. Membrane permeability of small molecules from unbiased molecular dynamics simulations
34. PLD2–PI(4,5)P2 interactions in fluid phase membranes: Structural modeling and molecular dynamics simulations
35. Molecular Structure of Sphingomyelin in Fluid Phase Bilayers Determined by the Joint Analysis of Small-Angle Neutron and X-ray Scattering Data
36. Incorporation of α-methylated amino acids into Apolipoprotein A-I mimetic peptides improves their helicity and cholesterol efflux potential
37. Time Scales of Lipid Dynamics and Molecular Dynamics
38. Modifying the CHARMM36 Lipid Force Field for LJ-PME Simulations
39. The Structural Origin of Cholesterol Induced Phosphoinositide Clustering
40. Characterization of Specific Ion Effects on PI(4,5)P2 Clustering using Molecular Dynamics Simulations and Graph-Theoretic Analysis
41. A dual apolipoprotein C-II mimetic–apolipoprotein C-III antagonist peptide lowers plasma triglycerides
42. Characterization of Specific Ion Effects on PI(4,5)P2 Clustering: Molecular Dynamics Simulations and Graph-Theoretic Analysis
43. Permeability of membranes in the liquid ordered and liquid disordered phases
44. Quantitative Characterization of Protein–Lipid Interactions by Free Energy Simulation between Binary Bilayers
45. Surface Shear Viscosity and Interleaflet Friction from Nonequilibrium Simulations of Lipid Bilayers
46. Structure and Function in Antimicrobial Piscidins: Histidine Position, Directionality of Membrane Insertion, and pH-Dependent Permeabilization
47. Interactions of Water and Alkanes: Modifying Additive Force Fields to Account for Polarization Effects
48. Revisiting Volumes of Lipid Components in Bilayers
49. Analyses of statistical errors in dynamics simulations
50. Molecular Dynamics Simulations of Membrane Permeability
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